miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15752 5' -48.8 NC_004065.1 + 473 0.69 0.996873
Target:  5'- -gGAC--CCUGGGCGUCAuuuuauacGCGAacgguggacAGCCg -3'
miRNA:   3'- aaUUGaaGGACUCGCAGU--------UGCU---------UCGG- -5'
15752 5' -48.8 NC_004065.1 + 554 0.66 0.99982
Target:  5'- -gAGCgcccCCUGuucGCG-CAACGggGCUg -3'
miRNA:   3'- aaUUGaa--GGACu--CGCaGUUGCuuCGG- -5'
15752 5' -48.8 NC_004065.1 + 1063 0.66 0.999634
Target:  5'- --cGCUcgaUCUGAGCGUCucgaGAUGAGGCa -3'
miRNA:   3'- aauUGAa--GGACUCGCAG----UUGCUUCGg -5'
15752 5' -48.8 NC_004065.1 + 6940 0.67 0.999296
Target:  5'- -cGGCgUCCgccgucgGAagcuGCGUCGACGGAGUCc -3'
miRNA:   3'- aaUUGaAGGa------CU----CGCAGUUGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 13082 0.67 0.999542
Target:  5'- -gGACgucgUCCcGGGUGUCGcguccgaggACGAAGUCu -3'
miRNA:   3'- aaUUGa---AGGaCUCGCAGU---------UGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 16531 0.67 0.99943
Target:  5'- -cAACUUUCguGGCGUCGACGGucgcGGCg -3'
miRNA:   3'- aaUUGAAGGacUCGCAGUUGCU----UCGg -5'
15752 5' -48.8 NC_004065.1 + 17986 0.69 0.994964
Target:  5'- -cGACcUCUUGGGUGUCGG-GGAGCUg -3'
miRNA:   3'- aaUUGaAGGACUCGCAGUUgCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 18237 0.68 0.998451
Target:  5'- gUGGCUUCCUaucuGCcgGUCAACaGAAGUCa -3'
miRNA:   3'- aAUUGAAGGAcu--CG--CAGUUG-CUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 25007 0.66 0.999634
Target:  5'- -gGGCgUCCgUGGGCG-CGGCaaGggGCCg -3'
miRNA:   3'- aaUUGaAGG-ACUCGCaGUUG--CuuCGG- -5'
15752 5' -48.8 NC_004065.1 + 28634 0.67 0.999135
Target:  5'- -cGACgcaUCUGuGCGUCGACGuGGCa -3'
miRNA:   3'- aaUUGaa-GGACuCGCAGUUGCuUCGg -5'
15752 5' -48.8 NC_004065.1 + 30517 0.67 0.99943
Target:  5'- ----aUUCCggGGGCGUUccgaaAACGAAGUCg -3'
miRNA:   3'- aauugAAGGa-CUCGCAG-----UUGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 30828 0.66 0.999709
Target:  5'- --uGCgcgUCCUc-GCGacccUCGACGAAGCCg -3'
miRNA:   3'- aauUGa--AGGAcuCGC----AGUUGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 34031 0.77 0.812903
Target:  5'- -cGACUcCCUGgaccaGGCGUCcauGACGAAGCCg -3'
miRNA:   3'- aaUUGAaGGAC-----UCGCAG---UUGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 37637 0.68 0.998717
Target:  5'- -----aUCCcGAGCGaUCAccgugACGAAGCCc -3'
miRNA:   3'- aauugaAGGaCUCGC-AGU-----UGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 41051 0.67 0.99943
Target:  5'- -gAGCUcgggCCgc-GCGgCGACGAAGCCg -3'
miRNA:   3'- aaUUGAa---GGacuCGCaGUUGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 53146 0.68 0.998139
Target:  5'- ---cCUUCCcaGAGCcUCGACgGGAGCCg -3'
miRNA:   3'- aauuGAAGGa-CUCGcAGUUG-CUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 57451 0.67 0.999296
Target:  5'- ---cUUUUCUuAGCGUCGGCG-GGCCg -3'
miRNA:   3'- aauuGAAGGAcUCGCAGUUGCuUCGG- -5'
15752 5' -48.8 NC_004065.1 + 60920 0.66 0.999634
Target:  5'- -aGAUcUUgaGAGCGUCGACGGA-CCa -3'
miRNA:   3'- aaUUGaAGgaCUCGCAGUUGCUUcGG- -5'
15752 5' -48.8 NC_004065.1 + 62014 0.7 0.993232
Target:  5'- -gAACcggCCcGAgacGCGUCGACGGAGCUg -3'
miRNA:   3'- aaUUGaa-GGaCU---CGCAGUUGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 66443 0.68 0.998451
Target:  5'- cUGACUUUCUcGAcGCgGUCGaucACGAAGCUg -3'
miRNA:   3'- aAUUGAAGGA-CU-CG-CAGU---UGCUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.