miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15752 5' -48.8 NC_004065.1 + 174115 0.67 0.999542
Target:  5'- -cGAUUgcUCCUuAGCGgggCAGCGggGUCu -3'
miRNA:   3'- aaUUGA--AGGAcUCGCa--GUUGCuuCGG- -5'
15752 5' -48.8 NC_004065.1 + 77183 0.67 0.999135
Target:  5'- --uGCUUCCUGugccacaaguGCG-CGGCGgcGCCc -3'
miRNA:   3'- aauUGAAGGACu---------CGCaGUUGCuuCGG- -5'
15752 5' -48.8 NC_004065.1 + 116140 0.67 0.999135
Target:  5'- -cGGCgUCCUGcGGCGgcu-CGggGCCg -3'
miRNA:   3'- aaUUGaAGGAC-UCGCaguuGCuuCGG- -5'
15752 5' -48.8 NC_004065.1 + 186143 0.67 0.999296
Target:  5'- -gAAC--CCUGAGgGUggcCGugGAGGCCg -3'
miRNA:   3'- aaUUGaaGGACUCgCA---GUugCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 229416 0.67 0.999296
Target:  5'- cUGACgagCCUGAGCGcgUAACuGGucuGCCa -3'
miRNA:   3'- aAUUGaa-GGACUCGCa-GUUG-CUu--CGG- -5'
15752 5' -48.8 NC_004065.1 + 41051 0.67 0.99943
Target:  5'- -gAGCUcgggCCgc-GCGgCGACGAAGCCg -3'
miRNA:   3'- aaUUGAa---GGacuCGCaGUUGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 30517 0.67 0.99943
Target:  5'- ----aUUCCggGGGCGUUccgaaAACGAAGUCg -3'
miRNA:   3'- aauugAAGGa-CUCGCAG-----UUGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 138308 0.67 0.99943
Target:  5'- -gGACgcggcCCUGAucGCGU--GCGAGGCCu -3'
miRNA:   3'- aaUUGaa---GGACU--CGCAguUGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 88604 0.67 0.999542
Target:  5'- -cGGCccUCCaUGAGC-UCGGCGAuGGCCg -3'
miRNA:   3'- aaUUGa-AGG-ACUCGcAGUUGCU-UCGG- -5'
15752 5' -48.8 NC_004065.1 + 223089 0.68 0.998451
Target:  5'- -cAGCUUCCgacGGCGgacgcCGAGGCCg -3'
miRNA:   3'- aaUUGAAGGac-UCGCaguu-GCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 66443 0.68 0.998451
Target:  5'- cUGACUUUCUcGAcGCgGUCGaucACGAAGCUg -3'
miRNA:   3'- aAUUGAAGGA-CU-CG-CAGU---UGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 179205 0.68 0.998139
Target:  5'- cUUAGCUuucuuUUCUGAGUGUCuucUGAAGUCu -3'
miRNA:   3'- -AAUUGA-----AGGACUCGCAGuu-GCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 67331 0.77 0.847458
Target:  5'- -gGACUUCCUGAcguacGCGagAGgGAAGCCg -3'
miRNA:   3'- aaUUGAAGGACU-----CGCagUUgCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 181511 0.76 0.863518
Target:  5'- gUGACggCCgUGGGCGUUGACGGAuGCCu -3'
miRNA:   3'- aAUUGaaGG-ACUCGCAGUUGCUU-CGG- -5'
15752 5' -48.8 NC_004065.1 + 206476 0.72 0.97379
Target:  5'- -aGACaUCCUGGGCGUUcgucACGuAGCCc -3'
miRNA:   3'- aaUUGaAGGACUCGCAGu---UGCuUCGG- -5'
15752 5' -48.8 NC_004065.1 + 73950 0.71 0.983181
Target:  5'- cUGGCagCCgagacaGGCGUCGGCGAGGUCg -3'
miRNA:   3'- aAUUGaaGGac----UCGCAGUUGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 73358 0.7 0.989775
Target:  5'- --cACUUUCgaGAGCGaCAuguGCGAGGCCa -3'
miRNA:   3'- aauUGAAGGa-CUCGCaGU---UGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 17986 0.69 0.994964
Target:  5'- -cGACcUCUUGGGUGUCGG-GGAGCUg -3'
miRNA:   3'- aaUUGaAGGACUCGCAGUUgCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 96282 0.69 0.996873
Target:  5'- -gGGCggCCagGGGCGUC-ACGGAcGCCg -3'
miRNA:   3'- aaUUGaaGGa-CUCGCAGuUGCUU-CGG- -5'
15752 5' -48.8 NC_004065.1 + 144510 0.69 0.996873
Target:  5'- -aAGCUguugCCgaagccGAGCGcCAGCGAcauGGCCa -3'
miRNA:   3'- aaUUGAa---GGa-----CUCGCaGUUGCU---UCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.