miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15753 3' -56 NC_004065.1 + 176790 0.66 0.967711
Target:  5'- cGCGCCGGCggagcGCGuUGGAccaGGUUGAgGGa -3'
miRNA:   3'- -CGCGGCCG-----CGCuACCU---CUAGCUgUUc -5'
15753 3' -56 NC_004065.1 + 62371 0.66 0.967711
Target:  5'- gGCGgUGGCgGCGggGGuGGUggCGGCGGGg -3'
miRNA:   3'- -CGCgGCCG-CGCuaCCuCUA--GCUGUUC- -5'
15753 3' -56 NC_004065.1 + 32852 0.66 0.967711
Target:  5'- -aGCCGGUccagcGCGuUGGcGAUgGACAGGu -3'
miRNA:   3'- cgCGGCCG-----CGCuACCuCUAgCUGUUC- -5'
15753 3' -56 NC_004065.1 + 149906 0.66 0.967711
Target:  5'- gGUGCCGGUugGAUGaGGGGcgcgcggcUCGGCAGGa -3'
miRNA:   3'- -CGCGGCCGcgCUAC-CUCU--------AGCUGUUC- -5'
15753 3' -56 NC_004065.1 + 34769 0.66 0.967413
Target:  5'- cCGCCGGgccagaucgcggcCGCGGUGGuGcacuaccUCGGCAAGc -3'
miRNA:   3'- cGCGGCC-------------GCGCUACCuCu------AGCUGUUC- -5'
15753 3' -56 NC_004065.1 + 83997 0.66 0.964636
Target:  5'- gGCGCCuucGGCGaUGAUGGAcugGAUCGcCGu- -3'
miRNA:   3'- -CGCGG---CCGC-GCUACCU---CUAGCuGUuc -5'
15753 3' -56 NC_004065.1 + 144078 0.66 0.964636
Target:  5'- cGCGUCgaGGacgGCGAU-GAGAUCGGCGAc -3'
miRNA:   3'- -CGCGG--CCg--CGCUAcCUCUAGCUGUUc -5'
15753 3' -56 NC_004065.1 + 59094 0.66 0.964636
Target:  5'- cGCGCCGGCGaaaGAaGGAcacgaGACAGa -3'
miRNA:   3'- -CGCGGCCGCg--CUaCCUcuag-CUGUUc -5'
15753 3' -56 NC_004065.1 + 85790 0.66 0.964636
Target:  5'- gGCGaCCgaGGCGCGAgaaccGGc-GUCGGCGAGa -3'
miRNA:   3'- -CGC-GG--CCGCGCUa----CCucUAGCUGUUC- -5'
15753 3' -56 NC_004065.1 + 123197 0.66 0.964636
Target:  5'- uGCGUCGugcccguguguuGCGUGAgggcuuccUGGAGGaagCGACAGGg -3'
miRNA:   3'- -CGCGGC------------CGCGCU--------ACCUCUa--GCUGUUC- -5'
15753 3' -56 NC_004065.1 + 189135 0.66 0.964636
Target:  5'- -aGCCGGCGCGugcGGuGAUC-AUggGc -3'
miRNA:   3'- cgCGGCCGCGCua-CCuCUAGcUGuuC- -5'
15753 3' -56 NC_004065.1 + 22467 0.66 0.964317
Target:  5'- uGUGCCuauguguuucucaGGCGCGAcgacgcGGAGcgcgCGGCGAGg -3'
miRNA:   3'- -CGCGG-------------CCGCGCUa-----CCUCua--GCUGUUC- -5'
15753 3' -56 NC_004065.1 + 83233 0.66 0.964317
Target:  5'- cCGCaggaCGGCGaaccugagaucgaCGAUGGAGAUgCGGCAGa -3'
miRNA:   3'- cGCG----GCCGC-------------GCUACCUCUA-GCUGUUc -5'
15753 3' -56 NC_004065.1 + 158700 0.66 0.96335
Target:  5'- aGCGCCGcGaugcccaacaggaGCGA-GGAGAUCGAgAu- -3'
miRNA:   3'- -CGCGGC-Cg------------CGCUaCCUCUAGCUgUuc -5'
15753 3' -56 NC_004065.1 + 151204 0.66 0.962695
Target:  5'- uGCuGCCGGUGCGAcuugaagucgaacgGGAgucgGAUCGACu-- -3'
miRNA:   3'- -CG-CGGCCGCGCUa-------------CCU----CUAGCUGuuc -5'
15753 3' -56 NC_004065.1 + 203759 0.66 0.962695
Target:  5'- uCGUCGGUGaCGAacauacgacgguccuUGGAgGAUCGACGGu -3'
miRNA:   3'- cGCGGCCGC-GCU---------------ACCU-CUAGCUGUUc -5'
15753 3' -56 NC_004065.1 + 120180 0.66 0.962695
Target:  5'- gGCaCCuGCGCGAUGGccccccgccgcagcaGGAcggCGACGAGg -3'
miRNA:   3'- -CGcGGcCGCGCUACC---------------UCUa--GCUGUUC- -5'
15753 3' -56 NC_004065.1 + 206818 0.66 0.961361
Target:  5'- uCGCCuGCuGCGAauucgGGcgGGAUCGGCGGGg -3'
miRNA:   3'- cGCGGcCG-CGCUa----CC--UCUAGCUGUUC- -5'
15753 3' -56 NC_004065.1 + 87117 0.66 0.961361
Target:  5'- -gGCCGGCGUguGGUGGuccaGGAugaaaUCGGCGAa -3'
miRNA:   3'- cgCGGCCGCG--CUACC----UCU-----AGCUGUUc -5'
15753 3' -56 NC_004065.1 + 96664 0.66 0.961361
Target:  5'- gGCGUCGGCGggcucgccCGAcGGAGgAUCGuGCGGGc -3'
miRNA:   3'- -CGCGGCCGC--------GCUaCCUC-UAGC-UGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.