miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15753 3' -56 NC_004065.1 + 130182 0.66 0.955694
Target:  5'- gGCGCCaucuGGUGCGAcGGGGccgugcucaugagCGACGGGa -3'
miRNA:   3'- -CGCGG----CCGCGCUaCCUCua-----------GCUGUUC- -5'
15753 3' -56 NC_004065.1 + 126517 0.66 0.957881
Target:  5'- uGCGUCuGCGUGAUGGAca-UGGCGGGu -3'
miRNA:   3'- -CGCGGcCGCGCUACCUcuaGCUGUUC- -5'
15753 3' -56 NC_004065.1 + 202611 0.66 0.954193
Target:  5'- -gGCUGGgUGCGAUgaGGAG-UCGACGAc -3'
miRNA:   3'- cgCGGCC-GCGCUA--CCUCuAGCUGUUc -5'
15753 3' -56 NC_004065.1 + 223529 0.66 0.954193
Target:  5'- aGUGCCGGcCGCGAcccgaccgUGGGuucgCGACAAc -3'
miRNA:   3'- -CGCGGCC-GCGCU--------ACCUcua-GCUGUUc -5'
15753 3' -56 NC_004065.1 + 38959 0.66 0.954193
Target:  5'- aGCGaCCGGCGCGggGGuucuGGUgGAa--- -3'
miRNA:   3'- -CGC-GGCCGCGCuaCCu---CUAgCUguuc -5'
15753 3' -56 NC_004065.1 + 155835 0.66 0.950293
Target:  5'- cGCGaCGGUGCGcUGGAGggCGGuCAu- -3'
miRNA:   3'- -CGCgGCCGCGCuACCUCuaGCU-GUuc -5'
15753 3' -56 NC_004065.1 + 26360 0.66 0.950293
Target:  5'- gGCGCUGGCgacgGCGgcGGGGAU--ACGGGg -3'
miRNA:   3'- -CGCGGCCG----CGCuaCCUCUAgcUGUUC- -5'
15753 3' -56 NC_004065.1 + 70119 0.66 0.950293
Target:  5'- aGCGgCGGCgGCGgcGccGAUCGACAGa -3'
miRNA:   3'- -CGCgGCCG-CGCuaCcuCUAGCUGUUc -5'
15753 3' -56 NC_004065.1 + 70540 0.66 0.950293
Target:  5'- cGCGCCugcaGGCGCGA--GAGAaCGAgcuCAAGg -3'
miRNA:   3'- -CGCGG----CCGCGCUacCUCUaGCU---GUUC- -5'
15753 3' -56 NC_004065.1 + 176790 0.66 0.967711
Target:  5'- cGCGCCGGCggagcGCGuUGGAccaGGUUGAgGGa -3'
miRNA:   3'- -CGCGGCCG-----CGCuACCU---CUAGCUgUUc -5'
15753 3' -56 NC_004065.1 + 141413 0.66 0.957881
Target:  5'- -aGCUGGCGgccaucgcCGAgcucaUGGAGGgccgCGACGAGg -3'
miRNA:   3'- cgCGGCCGC--------GCU-----ACCUCUa---GCUGUUC- -5'
15753 3' -56 NC_004065.1 + 62371 0.66 0.967711
Target:  5'- gGCGgUGGCgGCGggGGuGGUggCGGCGGGg -3'
miRNA:   3'- -CGCgGCCG-CGCuaCCuCUA--GCUGUUC- -5'
15753 3' -56 NC_004065.1 + 123197 0.66 0.964636
Target:  5'- uGCGUCGugcccguguguuGCGUGAgggcuuccUGGAGGaagCGACAGGg -3'
miRNA:   3'- -CGCGGC------------CGCGCU--------ACCUCUa--GCUGUUC- -5'
15753 3' -56 NC_004065.1 + 74851 0.66 0.961361
Target:  5'- gGCGCagguugaGGCgGCGGUGGuAGAcgGGCAGGu -3'
miRNA:   3'- -CGCGg------CCG-CGCUACC-UCUagCUGUUC- -5'
15753 3' -56 NC_004065.1 + 69473 0.66 0.957881
Target:  5'- cGCGCCGGCuGCGGUacgcGGccaaccagaAGAacUCGACGc- -3'
miRNA:   3'- -CGCGGCCG-CGCUA----CC---------UCU--AGCUGUuc -5'
15753 3' -56 NC_004065.1 + 149906 0.66 0.967711
Target:  5'- gGUGCCGGUugGAUGaGGGGcgcgcggcUCGGCAGGa -3'
miRNA:   3'- -CGCGGCCGcgCUAC-CUCU--------AGCUGUUC- -5'
15753 3' -56 NC_004065.1 + 32852 0.66 0.967711
Target:  5'- -aGCCGGUccagcGCGuUGGcGAUgGACAGGu -3'
miRNA:   3'- cgCGGCCG-----CGCuACCuCUAgCUGUUC- -5'
15753 3' -56 NC_004065.1 + 52665 0.66 0.957881
Target:  5'- cCGCUGGCggugGCGGUGGcGGAUgCGACu-- -3'
miRNA:   3'- cGCGGCCG----CGCUACC-UCUA-GCUGuuc -5'
15753 3' -56 NC_004065.1 + 85790 0.66 0.964636
Target:  5'- gGCGaCCgaGGCGCGAgaaccGGc-GUCGGCGAGa -3'
miRNA:   3'- -CGC-GG--CCGCGCUa----CCucUAGCUGUUC- -5'
15753 3' -56 NC_004065.1 + 96664 0.66 0.961361
Target:  5'- gGCGUCGGCGggcucgccCGAcGGAGgAUCGuGCGGGc -3'
miRNA:   3'- -CGCGGCCGC--------GCUaCCUC-UAGC-UGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.