miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15753 3' -56 NC_004065.1 + 153663 1.11 0.003834
Target:  5'- gGCGCCGGCGCGAUGGAGAUCGACAAGa -3'
miRNA:   3'- -CGCGGCCGCGCUACCUCUAGCUGUUC- -5'
15753 3' -56 NC_004065.1 + 99404 0.75 0.552903
Target:  5'- gGCgGCgGGCGCGuugcUGGAGAUCuuGACAAGc -3'
miRNA:   3'- -CG-CGgCCGCGCu---ACCUCUAG--CUGUUC- -5'
15753 3' -56 NC_004065.1 + 80405 0.75 0.57233
Target:  5'- gGCGCCGGUGaCGGUGGA---CGACAAc -3'
miRNA:   3'- -CGCGGCCGC-GCUACCUcuaGCUGUUc -5'
15753 3' -56 NC_004065.1 + 75641 0.75 0.57233
Target:  5'- cCGCCGGgGagGAgguggaagUGGAGGUCGGCGAGg -3'
miRNA:   3'- cGCGGCCgCg-CU--------ACCUCUAGCUGUUC- -5'
15753 3' -56 NC_004065.1 + 50851 0.75 0.57233
Target:  5'- aCGCCgGGCGCGggGccucugacggaGAGAUCGACGGGc -3'
miRNA:   3'- cGCGG-CCGCGCuaC-----------CUCUAGCUGUUC- -5'
15753 3' -56 NC_004065.1 + 36124 0.73 0.664911
Target:  5'- cGCuGCCGGCgGCGGuuguggugguuguguUGGuGGAUCGGCGGGa -3'
miRNA:   3'- -CG-CGGCCG-CGCU---------------ACC-UCUAGCUGUUC- -5'
15753 3' -56 NC_004065.1 + 147917 0.73 0.67081
Target:  5'- -aGCCgGGCGCaGcUGGAGAUCGACu-- -3'
miRNA:   3'- cgCGG-CCGCG-CuACCUCUAGCUGuuc -5'
15753 3' -56 NC_004065.1 + 87697 0.73 0.67081
Target:  5'- cCGCCGGCguucgagaccucGCGGUcGAcGAUCGACAAGa -3'
miRNA:   3'- cGCGGCCG------------CGCUAcCU-CUAGCUGUUC- -5'
15753 3' -56 NC_004065.1 + 3563 0.73 0.690389
Target:  5'- gGCGCUGGCagaagGCGAgcccGGucucGAUCGGCGAGg -3'
miRNA:   3'- -CGCGGCCG-----CGCUa---CCu---CUAGCUGUUC- -5'
15753 3' -56 NC_004065.1 + 103419 0.73 0.690389
Target:  5'- -gGCCGaCGCGAUGGAGcgCGGCcuGa -3'
miRNA:   3'- cgCGGCcGCGCUACCUCuaGCUGuuC- -5'
15753 3' -56 NC_004065.1 + 187395 0.73 0.690389
Target:  5'- gGCGCgCGGCGCGGUGuGGcGUCGaggGCGAGc -3'
miRNA:   3'- -CGCG-GCCGCGCUAC-CUcUAGC---UGUUC- -5'
15753 3' -56 NC_004065.1 + 34190 0.73 0.700115
Target:  5'- gGCGCCGGCGCcaGAcGGAGca-GACAGa -3'
miRNA:   3'- -CGCGGCCGCG--CUaCCUCuagCUGUUc -5'
15753 3' -56 NC_004065.1 + 102552 0.72 0.717482
Target:  5'- cCGCCGcGCcCGAccaccuccccggGGAGAUCGACGAGa -3'
miRNA:   3'- cGCGGC-CGcGCUa-----------CCUCUAGCUGUUC- -5'
15753 3' -56 NC_004065.1 + 108136 0.72 0.719399
Target:  5'- cGCGUCGaacauaGCGCGAUGGAGAguauuaaUGACAAc -3'
miRNA:   3'- -CGCGGC------CGCGCUACCUCUa------GCUGUUc -5'
15753 3' -56 NC_004065.1 + 107771 0.72 0.719399
Target:  5'- gGUGUCGGCGCG--GGAGcagcggCGACAGGa -3'
miRNA:   3'- -CGCGGCCGCGCuaCCUCua----GCUGUUC- -5'
15753 3' -56 NC_004065.1 + 75784 0.72 0.728941
Target:  5'- gGCGgCGGUcgGCGAgGGGGAgcggCGGCGAGg -3'
miRNA:   3'- -CGCgGCCG--CGCUaCCUCUa---GCUGUUC- -5'
15753 3' -56 NC_004065.1 + 35624 0.72 0.728941
Target:  5'- gGCGgCGGCgGCGgcGGGGAUgucaucggCGACAGGg -3'
miRNA:   3'- -CGCgGCCG-CGCuaCCUCUA--------GCUGUUC- -5'
15753 3' -56 NC_004065.1 + 19488 0.71 0.757064
Target:  5'- aGCGCCcaucGuCGCGAUGGGGA-CGGCGGa -3'
miRNA:   3'- -CGCGGc---C-GCGCUACCUCUaGCUGUUc -5'
15753 3' -56 NC_004065.1 + 31000 0.71 0.766244
Target:  5'- uGCGCCGGgGUggcgaGAUGGAGAggccggUGACGGc -3'
miRNA:   3'- -CGCGGCCgCG-----CUACCUCUa-----GCUGUUc -5'
15753 3' -56 NC_004065.1 + 197487 0.71 0.766244
Target:  5'- cCGCCGGCGCGAcGGGGccGUCauCAGGa -3'
miRNA:   3'- cGCGGCCGCGCUaCCUC--UAGcuGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.