Results 21 - 40 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15753 | 3' | -56 | NC_004065.1 | + | 87117 | 0.66 | 0.961361 |
Target: 5'- -gGCCGGCGUguGGUGGuccaGGAugaaaUCGGCGAa -3' miRNA: 3'- cgCGGCCGCG--CUACC----UCU-----AGCUGUUc -5' |
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15753 | 3' | -56 | NC_004065.1 | + | 74851 | 0.66 | 0.961361 |
Target: 5'- gGCGCagguugaGGCgGCGGUGGuAGAcgGGCAGGu -3' miRNA: 3'- -CGCGg------CCG-CGCUACC-UCUagCUGUUC- -5' |
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15753 | 3' | -56 | NC_004065.1 | + | 96664 | 0.66 | 0.961361 |
Target: 5'- gGCGUCGGCGggcucgccCGAcGGAGgAUCGuGCGGGc -3' miRNA: 3'- -CGCGGCCGC--------GCUaCCUC-UAGC-UGUUC- -5' |
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15753 | 3' | -56 | NC_004065.1 | + | 126517 | 0.66 | 0.957881 |
Target: 5'- uGCGUCuGCGUGAUGGAca-UGGCGGGu -3' miRNA: 3'- -CGCGGcCGCGCUACCUcuaGCUGUUC- -5' |
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15753 | 3' | -56 | NC_004065.1 | + | 52665 | 0.66 | 0.957881 |
Target: 5'- cCGCUGGCggugGCGGUGGcGGAUgCGACu-- -3' miRNA: 3'- cGCGGCCG----CGCUACC-UCUA-GCUGuuc -5' |
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15753 | 3' | -56 | NC_004065.1 | + | 69473 | 0.66 | 0.957881 |
Target: 5'- cGCGCCGGCuGCGGUacgcGGccaaccagaAGAacUCGACGc- -3' miRNA: 3'- -CGCGGCCG-CGCUA----CC---------UCU--AGCUGUuc -5' |
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15753 | 3' | -56 | NC_004065.1 | + | 141413 | 0.66 | 0.957881 |
Target: 5'- -aGCUGGCGgccaucgcCGAgcucaUGGAGGgccgCGACGAGg -3' miRNA: 3'- cgCGGCCGC--------GCU-----ACCUCUa---GCUGUUC- -5' |
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15753 | 3' | -56 | NC_004065.1 | + | 130182 | 0.66 | 0.955694 |
Target: 5'- gGCGCCaucuGGUGCGAcGGGGccgugcucaugagCGACGGGa -3' miRNA: 3'- -CGCGG----CCGCGCUaCCUCua-----------GCUGUUC- -5' |
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15753 | 3' | -56 | NC_004065.1 | + | 223529 | 0.66 | 0.954193 |
Target: 5'- aGUGCCGGcCGCGAcccgaccgUGGGuucgCGACAAc -3' miRNA: 3'- -CGCGGCC-GCGCU--------ACCUcua-GCUGUUc -5' |
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15753 | 3' | -56 | NC_004065.1 | + | 202611 | 0.66 | 0.954193 |
Target: 5'- -gGCUGGgUGCGAUgaGGAG-UCGACGAc -3' miRNA: 3'- cgCGGCC-GCGCUA--CCUCuAGCUGUUc -5' |
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15753 | 3' | -56 | NC_004065.1 | + | 38959 | 0.66 | 0.954193 |
Target: 5'- aGCGaCCGGCGCGggGGuucuGGUgGAa--- -3' miRNA: 3'- -CGC-GGCCGCGCuaCCu---CUAgCUguuc -5' |
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15753 | 3' | -56 | NC_004065.1 | + | 155835 | 0.66 | 0.950293 |
Target: 5'- cGCGaCGGUGCGcUGGAGggCGGuCAu- -3' miRNA: 3'- -CGCgGCCGCGCuACCUCuaGCU-GUuc -5' |
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15753 | 3' | -56 | NC_004065.1 | + | 70540 | 0.66 | 0.950293 |
Target: 5'- cGCGCCugcaGGCGCGA--GAGAaCGAgcuCAAGg -3' miRNA: 3'- -CGCGG----CCGCGCUacCUCUaGCU---GUUC- -5' |
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15753 | 3' | -56 | NC_004065.1 | + | 70119 | 0.66 | 0.950293 |
Target: 5'- aGCGgCGGCgGCGgcGccGAUCGACAGa -3' miRNA: 3'- -CGCgGCCG-CGCuaCcuCUAGCUGUUc -5' |
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15753 | 3' | -56 | NC_004065.1 | + | 26360 | 0.66 | 0.950293 |
Target: 5'- gGCGCUGGCgacgGCGgcGGGGAU--ACGGGg -3' miRNA: 3'- -CGCGGCCG----CGCuaCCUCUAgcUGUUC- -5' |
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15753 | 3' | -56 | NC_004065.1 | + | 31743 | 0.67 | 0.946178 |
Target: 5'- -aGCgGGUGCauccgccaGAaaUGGAGAUCGcACGAGg -3' miRNA: 3'- cgCGgCCGCG--------CU--ACCUCUAGC-UGUUC- -5' |
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15753 | 3' | -56 | NC_004065.1 | + | 36101 | 0.67 | 0.946178 |
Target: 5'- -gGUCcGCGCGAcucagGcGGGAUCGACGAGc -3' miRNA: 3'- cgCGGcCGCGCUa----C-CUCUAGCUGUUC- -5' |
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15753 | 3' | -56 | NC_004065.1 | + | 168710 | 0.67 | 0.946178 |
Target: 5'- uCGCCGuCGa-GUGcGAGGUCGACGGGg -3' miRNA: 3'- cGCGGCcGCgcUAC-CUCUAGCUGUUC- -5' |
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15753 | 3' | -56 | NC_004065.1 | + | 141742 | 0.67 | 0.946178 |
Target: 5'- aCGCCGGCcucaucaacgGCGAcgacgugcggGGGGA-CGACGAGu -3' miRNA: 3'- cGCGGCCG----------CGCUa---------CCUCUaGCUGUUC- -5' |
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15753 | 3' | -56 | NC_004065.1 | + | 214489 | 0.67 | 0.943167 |
Target: 5'- aGCGuaGGCGggugcgggacgguCGGUGGAaacgguguuguugagGAUCGACAGGc -3' miRNA: 3'- -CGCggCCGC-------------GCUACCU---------------CUAGCUGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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