miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15753 3' -56 NC_004065.1 + 3563 0.73 0.690389
Target:  5'- gGCGCUGGCagaagGCGAgcccGGucucGAUCGGCGAGg -3'
miRNA:   3'- -CGCGGCCG-----CGCUa---CCu---CUAGCUGUUC- -5'
15753 3' -56 NC_004065.1 + 8128 0.67 0.93729
Target:  5'- -aGCCgGGCGCcGUcGAGGUCGACGcAGa -3'
miRNA:   3'- cgCGG-CCGCGcUAcCUCUAGCUGU-UC- -5'
15753 3' -56 NC_004065.1 + 19415 0.68 0.911188
Target:  5'- cCGCCGGCGuCGgcGGAGGUgccggaGGCAc- -3'
miRNA:   3'- cGCGGCCGC-GCuaCCUCUAg-----CUGUuc -5'
15753 3' -56 NC_004065.1 + 19488 0.71 0.757064
Target:  5'- aGCGCCcaucGuCGCGAUGGGGA-CGGCGGa -3'
miRNA:   3'- -CGCGGc---C-GCGCUACCUCUaGCUGUUc -5'
15753 3' -56 NC_004065.1 + 20848 0.68 0.911188
Target:  5'- aGCGCCGGUccGCGAgcGGuAGGUagagaGGCGAGc -3'
miRNA:   3'- -CGCGGCCG--CGCUa-CC-UCUAg----CUGUUC- -5'
15753 3' -56 NC_004065.1 + 22241 0.7 0.826942
Target:  5'- cGUGCCGGCGCccaacAUGGucc-CGACGAGa -3'
miRNA:   3'- -CGCGGCCGCGc----UACCucuaGCUGUUC- -5'
15753 3' -56 NC_004065.1 + 22467 0.66 0.964317
Target:  5'- uGUGCCuauguguuucucaGGCGCGAcgacgcGGAGcgcgCGGCGAGg -3'
miRNA:   3'- -CGCGG-------------CCGCGCUa-----CCUCua--GCUGUUC- -5'
15753 3' -56 NC_004065.1 + 24514 0.68 0.916853
Target:  5'- aGCGCCGGCcccaaGAUGGcGG-CGGCAGc -3'
miRNA:   3'- -CGCGGCCGcg---CUACCuCUaGCUGUUc -5'
15753 3' -56 NC_004065.1 + 26360 0.66 0.950293
Target:  5'- gGCGCUGGCgacgGCGgcGGGGAU--ACGGGg -3'
miRNA:   3'- -CGCGGCCG----CGCuaCCUCUAgcUGUUC- -5'
15753 3' -56 NC_004065.1 + 26371 0.67 0.941844
Target:  5'- gGCGCUGauauGCGUGGUGuGGGuguGUUGGCGAGa -3'
miRNA:   3'- -CGCGGC----CGCGCUAC-CUC---UAGCUGUUC- -5'
15753 3' -56 NC_004065.1 + 30015 0.68 0.904702
Target:  5'- cGCGaccgucaCCGGCGCGGUGGuGAcgggcaCGaACGAGg -3'
miRNA:   3'- -CGC-------GGCCGCGCUACCuCUa-----GC-UGUUC- -5'
15753 3' -56 NC_004065.1 + 31000 0.71 0.766244
Target:  5'- uGCGCCGGgGUggcgaGAUGGAGAggccggUGACGGc -3'
miRNA:   3'- -CGCGGCCgCG-----CUACCUCUa-----GCUGUUc -5'
15753 3' -56 NC_004065.1 + 31743 0.67 0.946178
Target:  5'- -aGCgGGUGCauccgccaGAaaUGGAGAUCGcACGAGg -3'
miRNA:   3'- cgCGgCCGCG--------CU--ACCUCUAGC-UGUUC- -5'
15753 3' -56 NC_004065.1 + 32852 0.66 0.967711
Target:  5'- -aGCCGGUccagcGCGuUGGcGAUgGACAGGu -3'
miRNA:   3'- cgCGGCCG-----CGCuACCuCUAgCUGUUC- -5'
15753 3' -56 NC_004065.1 + 33662 0.67 0.941844
Target:  5'- cCGuCCGGCGCGcggGGAGGgccgCuGCGAGa -3'
miRNA:   3'- cGC-GGCCGCGCua-CCUCUa---GcUGUUC- -5'
15753 3' -56 NC_004065.1 + 34190 0.73 0.700115
Target:  5'- gGCGCCGGCGCcaGAcGGAGca-GACAGa -3'
miRNA:   3'- -CGCGGCCGCG--CUaCCUCuagCUGUUc -5'
15753 3' -56 NC_004065.1 + 34769 0.66 0.967413
Target:  5'- cCGCCGGgccagaucgcggcCGCGGUGGuGcacuaccUCGGCAAGc -3'
miRNA:   3'- cGCGGCC-------------GCGCUACCuCu------AGCUGUUC- -5'
15753 3' -56 NC_004065.1 + 35505 0.67 0.932515
Target:  5'- aCGaCCGGCGUcuUGGAGG-CGACGGa -3'
miRNA:   3'- cGC-GGCCGCGcuACCUCUaGCUGUUc -5'
15753 3' -56 NC_004065.1 + 35624 0.72 0.728941
Target:  5'- gGCGgCGGCgGCGgcGGGGAUgucaucggCGACAGGg -3'
miRNA:   3'- -CGCgGCCG-CGCuaCCUCUA--------GCUGUUC- -5'
15753 3' -56 NC_004065.1 + 36101 0.67 0.946178
Target:  5'- -gGUCcGCGCGAcucagGcGGGAUCGACGAGc -3'
miRNA:   3'- cgCGGcCGCGCUa----C-CUCUAGCUGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.