miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15753 3' -56 NC_004065.1 + 44672 0.68 0.892879
Target:  5'- uCGUCGGCgacgaaGCGAUGGucGUCGACcAGa -3'
miRNA:   3'- cGCGGCCG------CGCUACCucUAGCUGuUC- -5'
15753 3' -56 NC_004065.1 + 98020 0.7 0.826942
Target:  5'- cCGCCGGCGCG-UGGcGGUCGuuguCGGu -3'
miRNA:   3'- cGCGGCCGCGCuACCuCUAGCu---GUUc -5'
15753 3' -56 NC_004065.1 + 119989 0.7 0.850629
Target:  5'- cGCGCCGaGCG-GGUGGaAGAacaCGGCGGGc -3'
miRNA:   3'- -CGCGGC-CGCgCUACC-UCUa--GCUGUUC- -5'
15753 3' -56 NC_004065.1 + 151226 0.69 0.858163
Target:  5'- cCGCCGGCGCGG-GGaAGAccUCGAgcgucCAGGu -3'
miRNA:   3'- cGCGGCCGCGCUaCC-UCU--AGCU-----GUUC- -5'
15753 3' -56 NC_004065.1 + 41488 0.69 0.865508
Target:  5'- uGCGCCGGgGCGucgggacggGGAGcgCG-CGGGc -3'
miRNA:   3'- -CGCGGCCgCGCua-------CCUCuaGCuGUUC- -5'
15753 3' -56 NC_004065.1 + 145427 0.69 0.865508
Target:  5'- gGCGgCGGCgcuuagggaaucGCGAUGGAGAggCGAUg-- -3'
miRNA:   3'- -CGCgGCCG------------CGCUACCUCUa-GCUGuuc -5'
15753 3' -56 NC_004065.1 + 77085 0.69 0.879604
Target:  5'- uGUGCCuGC-CGcUGGAGAUCGACu-- -3'
miRNA:   3'- -CGCGGcCGcGCuACCUCUAGCUGuuc -5'
15753 3' -56 NC_004065.1 + 114189 0.69 0.879604
Target:  5'- cCGCCGGcCGCGA-GGAGAU-GGCu-- -3'
miRNA:   3'- cGCGGCC-GCGCUaCCUCUAgCUGuuc -5'
15753 3' -56 NC_004065.1 + 130284 0.69 0.886346
Target:  5'- aGgGUgGaGCGCGA-GGAGGaCGACGAGa -3'
miRNA:   3'- -CgCGgC-CGCGCUaCCUCUaGCUGUUC- -5'
15753 3' -56 NC_004065.1 + 135132 0.7 0.826942
Target:  5'- cGgGCgGGCGCGGcgGGuGAUgaCGACGGGg -3'
miRNA:   3'- -CgCGgCCGCGCUa-CCuCUA--GCUGUUC- -5'
15753 3' -56 NC_004065.1 + 22241 0.7 0.826942
Target:  5'- cGUGCCGGCGCccaacAUGGucc-CGACGAGa -3'
miRNA:   3'- -CGCGGCCGCGc----UACCucuaGCUGUUC- -5'
15753 3' -56 NC_004065.1 + 130884 0.7 0.818707
Target:  5'- gGCGCCGGCGUGAgguccucauGAGGUgUGugGAGc -3'
miRNA:   3'- -CGCGGCCGCGCUac-------CUCUA-GCugUUC- -5'
15753 3' -56 NC_004065.1 + 50851 0.75 0.57233
Target:  5'- aCGCCgGGCGCGggGccucugacggaGAGAUCGACGGGc -3'
miRNA:   3'- cGCGG-CCGCGCuaC-----------CUCUAGCUGUUC- -5'
15753 3' -56 NC_004065.1 + 36124 0.73 0.664911
Target:  5'- cGCuGCCGGCgGCGGuuguggugguuguguUGGuGGAUCGGCGGGa -3'
miRNA:   3'- -CG-CGGCCG-CGCU---------------ACC-UCUAGCUGUUC- -5'
15753 3' -56 NC_004065.1 + 102552 0.72 0.717482
Target:  5'- cCGCCGcGCcCGAccaccuccccggGGAGAUCGACGAGa -3'
miRNA:   3'- cGCGGC-CGcGCUa-----------CCUCUAGCUGUUC- -5'
15753 3' -56 NC_004065.1 + 108136 0.72 0.719399
Target:  5'- cGCGUCGaacauaGCGCGAUGGAGAguauuaaUGACAAc -3'
miRNA:   3'- -CGCGGC------CGCGCUACCUCUa------GCUGUUc -5'
15753 3' -56 NC_004065.1 + 35624 0.72 0.728941
Target:  5'- gGCGgCGGCgGCGgcGGGGAUgucaucggCGACAGGg -3'
miRNA:   3'- -CGCgGCCG-CGCuaCCUCUA--------GCUGUUC- -5'
15753 3' -56 NC_004065.1 + 75784 0.72 0.728941
Target:  5'- gGCGgCGGUcgGCGAgGGGGAgcggCGGCGAGg -3'
miRNA:   3'- -CGCgGCCG--CGCUaCCUCUa---GCUGUUC- -5'
15753 3' -56 NC_004065.1 + 19488 0.71 0.757064
Target:  5'- aGCGCCcaucGuCGCGAUGGGGA-CGGCGGa -3'
miRNA:   3'- -CGCGGc---C-GCGCUACCUCUaGCUGUUc -5'
15753 3' -56 NC_004065.1 + 66130 0.71 0.80177
Target:  5'- gGCGCUGGCGCGcUGGgccgcGGAcCGGCGc- -3'
miRNA:   3'- -CGCGGCCGCGCuACC-----UCUaGCUGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.