miRNA display CGI


Results 1 - 20 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15753 5' -53.7 NC_004065.1 + 111683 0.66 0.990846
Target:  5'- aCGCCGACgCcGAcg-CCAugGaCGuCGGCg -3'
miRNA:   3'- -GCGGCUG-GaCUaaaGGUugU-GC-GCCG- -5'
15753 5' -53.7 NC_004065.1 + 109479 0.66 0.990846
Target:  5'- gCGCCGACCgccg--CCGGCACacCGGa -3'
miRNA:   3'- -GCGGCUGGacuaaaGGUUGUGc-GCCg -5'
15753 5' -53.7 NC_004065.1 + 163291 0.66 0.990846
Target:  5'- aCGCCG-CC-GGggUCCGacgGCACG-GGCg -3'
miRNA:   3'- -GCGGCuGGaCUaaAGGU---UGUGCgCCG- -5'
15753 5' -53.7 NC_004065.1 + 103460 0.66 0.990846
Target:  5'- -cCCGAgCUGAUgUUCAcgaucuGCGCGCGGa -3'
miRNA:   3'- gcGGCUgGACUAaAGGU------UGUGCGCCg -5'
15753 5' -53.7 NC_004065.1 + 223281 0.66 0.990846
Target:  5'- gGaCCGACCcGAgugCCG-C-CGCGGCu -3'
miRNA:   3'- gC-GGCUGGaCUaaaGGUuGuGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 58593 0.66 0.990846
Target:  5'- uCGCCGACgacggcgGAg--UCGagaucgacGCGCGCGGCg -3'
miRNA:   3'- -GCGGCUGga-----CUaaaGGU--------UGUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 146644 0.66 0.990846
Target:  5'- -aUCGACCUGcacuacgCCGACAUGaGGCa -3'
miRNA:   3'- gcGGCUGGACuaaa---GGUUGUGCgCCG- -5'
15753 5' -53.7 NC_004065.1 + 183205 0.66 0.990728
Target:  5'- aCGUCGGCCgcgaugaucugcuUGAUgaacUgCAACAUGCaGGCg -3'
miRNA:   3'- -GCGGCUGG-------------ACUAa---AgGUUGUGCG-CCG- -5'
15753 5' -53.7 NC_004065.1 + 163532 0.66 0.990728
Target:  5'- gCGUCG-CCUGGUUcgucugcagcgucUCCGACAgcCGCGcGUa -3'
miRNA:   3'- -GCGGCuGGACUAA-------------AGGUUGU--GCGC-CG- -5'
15753 5' -53.7 NC_004065.1 + 67449 0.66 0.989614
Target:  5'- aCGaCgGACCUGucggCCGAgGCgGCGGUg -3'
miRNA:   3'- -GC-GgCUGGACuaaaGGUUgUG-CGCCG- -5'
15753 5' -53.7 NC_004065.1 + 13814 0.66 0.989614
Target:  5'- gCGCCGcGCCUuua---CGuCACGCGGCa -3'
miRNA:   3'- -GCGGC-UGGAcuaaagGUuGUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 128395 0.66 0.989614
Target:  5'- aGCCGGCUgugGGgg-CCgAGCGgcaGCGGCg -3'
miRNA:   3'- gCGGCUGGa--CUaaaGG-UUGUg--CGCCG- -5'
15753 5' -53.7 NC_004065.1 + 48093 0.66 0.989352
Target:  5'- uCGCgGACCUGuggcggcggCgGugGCGgCGGCg -3'
miRNA:   3'- -GCGgCUGGACuaaa-----GgUugUGC-GCCG- -5'
15753 5' -53.7 NC_004065.1 + 113161 0.66 0.989086
Target:  5'- aCGCCaGCCUGAUgaucuucaacuccUCCAgGCGCauggacgacaGCGGCu -3'
miRNA:   3'- -GCGGcUGGACUAa------------AGGU-UGUG----------CGCCG- -5'
15753 5' -53.7 NC_004065.1 + 32528 0.66 0.988255
Target:  5'- gCGCCcauCCUGAUgacggccCCGuCGCGcCGGCg -3'
miRNA:   3'- -GCGGcu-GGACUAaa-----GGUuGUGC-GCCG- -5'
15753 5' -53.7 NC_004065.1 + 194804 0.66 0.988255
Target:  5'- uCGUCGAgccCCUGAacgCCGugGCgGUGGCc -3'
miRNA:   3'- -GCGGCU---GGACUaaaGGUugUG-CGCCG- -5'
15753 5' -53.7 NC_004065.1 + 151094 0.66 0.988255
Target:  5'- aCGCC-ACCaUGcugUCCGACGcCGuCGGCa -3'
miRNA:   3'- -GCGGcUGG-ACuaaAGGUUGU-GC-GCCG- -5'
15753 5' -53.7 NC_004065.1 + 99096 0.66 0.988255
Target:  5'- cCGUCGACCaacaaGAgucUCUucCugGCGGCg -3'
miRNA:   3'- -GCGGCUGGa----CUaa-AGGuuGugCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 51114 0.66 0.988255
Target:  5'- aCGCCGuuCUGcg--CCGAUugcUGCGGCa -3'
miRNA:   3'- -GCGGCugGACuaaaGGUUGu--GCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 65562 0.66 0.988112
Target:  5'- uCGCCGgcgggucgcgaguACCUGua--CCGcgACGCGGCg -3'
miRNA:   3'- -GCGGC-------------UGGACuaaaGGUugUGCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.