miRNA display CGI


Results 1 - 20 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15753 5' -53.7 NC_004065.1 + 51114 0.66 0.988255
Target:  5'- aCGCCGuuCUGcg--CCGAUugcUGCGGCa -3'
miRNA:   3'- -GCGGCugGACuaaaGGUUGu--GCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 48093 0.66 0.989352
Target:  5'- uCGCgGACCUGuggcggcggCgGugGCGgCGGCg -3'
miRNA:   3'- -GCGgCUGGACuaaa-----GgUugUGC-GCCG- -5'
15753 5' -53.7 NC_004065.1 + 150585 0.66 0.987376
Target:  5'- cCGCCGcguACgUGuauauaagcuucUCCAGCAgCGCGGCu -3'
miRNA:   3'- -GCGGC---UGgACuaa---------AGGUUGU-GCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 28210 0.66 0.986763
Target:  5'- uGCCaguucgagGACCUGAccgagacCCugUACGCGGCc -3'
miRNA:   3'- gCGG--------CUGGACUaaa----GGuuGUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 26890 0.66 0.986288
Target:  5'- cCGCCGGCCgg---UCCAgaggccgcucgaccGCACGcCGGa -3'
miRNA:   3'- -GCGGCUGGacuaaAGGU--------------UGUGC-GCCg -5'
15753 5' -53.7 NC_004065.1 + 221717 0.66 0.9858
Target:  5'- gGCCG-UCUGAgguacacgaccgCUAACAcCGCGGCc -3'
miRNA:   3'- gCGGCuGGACUaaa---------GGUUGU-GCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 61449 0.66 0.986763
Target:  5'- gGCCGGCCcGAcccgcUCCGugAUGCGcuGCg -3'
miRNA:   3'- gCGGCUGGaCUaa---AGGUugUGCGC--CG- -5'
15753 5' -53.7 NC_004065.1 + 13814 0.66 0.989614
Target:  5'- gCGCCGcGCCUuua---CGuCACGCGGCa -3'
miRNA:   3'- -GCGGC-UGGAcuaaagGUuGUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 65562 0.66 0.988112
Target:  5'- uCGCCGgcgggucgcgaguACCUGua--CCGcgACGCGGCg -3'
miRNA:   3'- -GCGGC-------------UGGACuaaaGGUugUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 141081 0.66 0.984958
Target:  5'- aCGCgGGCCUGg---CCAGCuACcgccgcgccuucaGCGGCa -3'
miRNA:   3'- -GCGgCUGGACuaaaGGUUG-UG-------------CGCCG- -5'
15753 5' -53.7 NC_004065.1 + 55945 0.66 0.986763
Target:  5'- aGCCGcACUUGGUgagcaggUgCAGCACGgGGa -3'
miRNA:   3'- gCGGC-UGGACUAa------AgGUUGUGCgCCg -5'
15753 5' -53.7 NC_004065.1 + 169228 0.66 0.986763
Target:  5'- uCGUCGaACUUgGGUUUCuCGugACaGCGGCa -3'
miRNA:   3'- -GCGGC-UGGA-CUAAAG-GUugUG-CGCCG- -5'
15753 5' -53.7 NC_004065.1 + 97215 0.66 0.986763
Target:  5'- gGCCaGCCUGGggaugUucggggucgcgUCCGGCGCaCGGCg -3'
miRNA:   3'- gCGGcUGGACUa----A-----------AGGUUGUGcGCCG- -5'
15753 5' -53.7 NC_004065.1 + 32823 0.66 0.987376
Target:  5'- aGCCGucggGCCgcucguccgagaaggUGAgccggUCCAGCGCGuUGGCg -3'
miRNA:   3'- gCGGC----UGG---------------ACUaa---AGGUUGUGC-GCCG- -5'
15753 5' -53.7 NC_004065.1 + 194804 0.66 0.988255
Target:  5'- uCGUCGAgccCCUGAacgCCGugGCgGUGGCc -3'
miRNA:   3'- -GCGGCU---GGACUaaaGGUugUG-CGCCG- -5'
15753 5' -53.7 NC_004065.1 + 111683 0.66 0.990846
Target:  5'- aCGCCGACgCcGAcg-CCAugGaCGuCGGCg -3'
miRNA:   3'- -GCGGCUG-GaCUaaaGGUugU-GC-GCCG- -5'
15753 5' -53.7 NC_004065.1 + 113161 0.66 0.989086
Target:  5'- aCGCCaGCCUGAUgaucuucaacuccUCCAgGCGCauggacgacaGCGGCu -3'
miRNA:   3'- -GCGGcUGGACUAa------------AGGU-UGUG----------CGCCG- -5'
15753 5' -53.7 NC_004065.1 + 128395 0.66 0.989614
Target:  5'- aGCCGGCUgugGGgg-CCgAGCGgcaGCGGCg -3'
miRNA:   3'- gCGGCUGGa--CUaaaGG-UUGUg--CGCCG- -5'
15753 5' -53.7 NC_004065.1 + 67449 0.66 0.989614
Target:  5'- aCGaCgGACCUGucggCCGAgGCgGCGGUg -3'
miRNA:   3'- -GC-GgCUGGACuaaaGGUUgUG-CGCCG- -5'
15753 5' -53.7 NC_004065.1 + 133422 0.66 0.985129
Target:  5'- aCGCCGugUcGuaUUCgGGCGCGuCGGCc -3'
miRNA:   3'- -GCGGCugGaCuaAAGgUUGUGC-GCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.