miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15753 5' -53.7 NC_004065.1 + 153696 1.13 0.004583
Target:  5'- gCGCCGACCUGAUUUCCAACACGCGGCg -3'
miRNA:   3'- -GCGGCUGGACUAAAGGUUGUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 214765 0.83 0.317159
Target:  5'- aGCCGACCUGAcgUUCCAcagGCACGuuGCg -3'
miRNA:   3'- gCGGCUGGACUa-AAGGU---UGUGCgcCG- -5'
15753 5' -53.7 NC_004065.1 + 194578 0.8 0.436952
Target:  5'- gCGUCGACUUGGaUUCCGGCAguCGCGGUa -3'
miRNA:   3'- -GCGGCUGGACUaAAGGUUGU--GCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 55412 0.79 0.473034
Target:  5'- aGaCCGGCCUGAUgggcugUCCGGgGCGCGGg -3'
miRNA:   3'- gC-GGCUGGACUAa-----AGGUUgUGCGCCg -5'
15753 5' -53.7 NC_004065.1 + 196423 0.77 0.587831
Target:  5'- uGCCGGCCcgcagcagcaucgUGAUgccgUCCGcCACGCGGUa -3'
miRNA:   3'- gCGGCUGG-------------ACUAa---AGGUuGUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 201003 0.77 0.59881
Target:  5'- aCGCCGGUCUGAcucgaggCCGcguGCGCGCGGCg -3'
miRNA:   3'- -GCGGCUGGACUaaa----GGU---UGUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 95754 0.75 0.688855
Target:  5'- aCGCCGACCacauUGAUcucgUCGACGUGCGGCu -3'
miRNA:   3'- -GCGGCUGG----ACUAaa--GGUUGUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 110762 0.75 0.688855
Target:  5'- gCGCCG-CCUGAcauauaGGCGCGCGGCc -3'
miRNA:   3'- -GCGGCuGGACUaaagg-UUGUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 105285 0.74 0.747193
Target:  5'- cCGCCGugCUGAacaaCCAcGCGUGCGGCg -3'
miRNA:   3'- -GCGGCugGACUaaa-GGU-UGUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 197564 0.74 0.756627
Target:  5'- gCGCCGAcgaCCUGGUg---GGCAUGCGGCu -3'
miRNA:   3'- -GCGGCU---GGACUAaaggUUGUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 26011 0.73 0.773336
Target:  5'- uCGCUGACCgUGGccucggcgucgUCCAccagcggcucGCACGCGGCg -3'
miRNA:   3'- -GCGGCUGG-ACUaa---------AGGU----------UGUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 198546 0.73 0.775169
Target:  5'- aGCCGcACCaGG--UCC-GCGCGCGGCa -3'
miRNA:   3'- gCGGC-UGGaCUaaAGGuUGUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 100125 0.73 0.775169
Target:  5'- cCGCCaGGCCccGAUcagggUCCGccgcaGCGCGCGGCa -3'
miRNA:   3'- -GCGG-CUGGa-CUAa----AGGU-----UGUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 162657 0.73 0.78426
Target:  5'- aCGCCGACCgucacGAUguguacaCCGGCA-GCGGCu -3'
miRNA:   3'- -GCGGCUGGa----CUAaa-----GGUUGUgCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 24502 0.73 0.78426
Target:  5'- cCGCCGGcCCUGAgcgCCGGCcccaagaugGCGgCGGCa -3'
miRNA:   3'- -GCGGCU-GGACUaaaGGUUG---------UGC-GCCG- -5'
15753 5' -53.7 NC_004065.1 + 42024 0.73 0.79322
Target:  5'- uCGCgGACCUccgcGAg--CCAuguuGCGCGCGGCc -3'
miRNA:   3'- -GCGgCUGGA----CUaaaGGU----UGUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 120438 0.73 0.79322
Target:  5'- aGCgCGGCCUGAUacgccgCCAggagACAgGCGGCc -3'
miRNA:   3'- gCG-GCUGGACUAaa----GGU----UGUgCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 142924 0.73 0.79322
Target:  5'- aCGCCGGCCgucGAgUUCCGGCACcagGGCc -3'
miRNA:   3'- -GCGGCUGGa--CUaAAGGUUGUGcg-CCG- -5'
15753 5' -53.7 NC_004065.1 + 63908 0.73 0.80204
Target:  5'- uGCCGACgUGAUUcaUCAACAgGCGGa -3'
miRNA:   3'- gCGGCUGgACUAAa-GGUUGUgCGCCg -5'
15753 5' -53.7 NC_004065.1 + 56879 0.73 0.80204
Target:  5'- gGCCuccGCCUGGUaUCCAGCGUGCGGa -3'
miRNA:   3'- gCGGc--UGGACUAaAGGUUGUGCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.