miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15753 5' -53.7 NC_004065.1 + 32823 0.66 0.987376
Target:  5'- aGCCGucggGCCgcucguccgagaaggUGAgccggUCCAGCGCGuUGGCg -3'
miRNA:   3'- gCGGC----UGG---------------ACUaa---AGGUUGUGC-GCCG- -5'
15753 5' -53.7 NC_004065.1 + 150585 0.66 0.987376
Target:  5'- cCGCCGcguACgUGuauauaagcuucUCCAGCAgCGCGGCu -3'
miRNA:   3'- -GCGGC---UGgACuaa---------AGGUUGU-GCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 61449 0.66 0.986763
Target:  5'- gGCCGGCCcGAcccgcUCCGugAUGCGcuGCg -3'
miRNA:   3'- gCGGCUGGaCUaa---AGGUugUGCGC--CG- -5'
15753 5' -53.7 NC_004065.1 + 97215 0.66 0.986763
Target:  5'- gGCCaGCCUGGggaugUucggggucgcgUCCGGCGCaCGGCg -3'
miRNA:   3'- gCGGcUGGACUa----A-----------AGGUUGUGcGCCG- -5'
15753 5' -53.7 NC_004065.1 + 55945 0.66 0.986763
Target:  5'- aGCCGcACUUGGUgagcaggUgCAGCACGgGGa -3'
miRNA:   3'- gCGGC-UGGACUAa------AgGUUGUGCgCCg -5'
15753 5' -53.7 NC_004065.1 + 28210 0.66 0.986763
Target:  5'- uGCCaguucgagGACCUGAccgagacCCugUACGCGGCc -3'
miRNA:   3'- gCGG--------CUGGACUaaa----GGuuGUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 63378 0.66 0.986763
Target:  5'- uGCUGACgCUGAUgcggaCCAGC-CGCGccaGCg -3'
miRNA:   3'- gCGGCUG-GACUAaa---GGUUGuGCGC---CG- -5'
15753 5' -53.7 NC_004065.1 + 169228 0.66 0.986763
Target:  5'- uCGUCGaACUUgGGUUUCuCGugACaGCGGCa -3'
miRNA:   3'- -GCGGC-UGGA-CUAAAG-GUugUG-CGCCG- -5'
15753 5' -53.7 NC_004065.1 + 167885 0.66 0.986763
Target:  5'- aGCUGAUCccc--UCCugUACGCGGCg -3'
miRNA:   3'- gCGGCUGGacuaaAGGuuGUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 138404 0.66 0.986763
Target:  5'- cCGUCGACCgcGAcUUCUGcgGCGCGGUc -3'
miRNA:   3'- -GCGGCUGGa-CUaAAGGUugUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 149713 0.66 0.986763
Target:  5'- gCGUCGAUCUcGUUcgCCGcaccGCAUGCGGUu -3'
miRNA:   3'- -GCGGCUGGAcUAAa-GGU----UGUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 83499 0.66 0.986606
Target:  5'- gGCCGACCaaggaccUGAUcucgUUgAugGCGuCGGCa -3'
miRNA:   3'- gCGGCUGG-------ACUAa---AGgUugUGC-GCCG- -5'
15753 5' -53.7 NC_004065.1 + 26890 0.66 0.986288
Target:  5'- cCGCCGGCCgg---UCCAgaggccgcucgaccGCACGcCGGa -3'
miRNA:   3'- -GCGGCUGGacuaaAGGU--------------UGUGC-GCCg -5'
15753 5' -53.7 NC_004065.1 + 221717 0.66 0.9858
Target:  5'- gGCCG-UCUGAgguacacgaccgCUAACAcCGCGGCc -3'
miRNA:   3'- gCGGCuGGACUaaa---------GGUUGU-GCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 133422 0.66 0.985129
Target:  5'- aCGCCGugUcGuaUUCgGGCGCGuCGGCc -3'
miRNA:   3'- -GCGGCugGaCuaAAGgUUGUGC-GCCG- -5'
15753 5' -53.7 NC_004065.1 + 186664 0.66 0.985129
Target:  5'- uCGUCGACUcgGAcgagugUCgGGgACGCGGCg -3'
miRNA:   3'- -GCGGCUGGa-CUaa----AGgUUgUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 169861 0.66 0.985129
Target:  5'- gCGUCGACCUG---UgCAugGCG-GGCg -3'
miRNA:   3'- -GCGGCUGGACuaaAgGUugUGCgCCG- -5'
15753 5' -53.7 NC_004065.1 + 29258 0.66 0.985129
Target:  5'- cCGCgCGACgaGAgagcgaCCGACGCGUGaGCc -3'
miRNA:   3'- -GCG-GCUGgaCUaaa---GGUUGUGCGC-CG- -5'
15753 5' -53.7 NC_004065.1 + 141081 0.66 0.984958
Target:  5'- aCGCgGGCCUGg---CCAGCuACcgccgcgccuucaGCGGCa -3'
miRNA:   3'- -GCGgCUGGACuaaaGGUUG-UG-------------CGCCG- -5'
15753 5' -53.7 NC_004065.1 + 34589 0.66 0.984958
Target:  5'- -uCgGACCUG---UCCGACgacggcgACGCGGCg -3'
miRNA:   3'- gcGgCUGGACuaaAGGUUG-------UGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.