miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15753 5' -53.7 NC_004065.1 + 509 0.68 0.955725
Target:  5'- aGCCGuuuUCUGGgagUCUAcUACGCGGUg -3'
miRNA:   3'- gCGGCu--GGACUaa-AGGUuGUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 3883 0.69 0.934115
Target:  5'- aGCUGGgCUGugcgaugCCAGCcuccACGCGGCg -3'
miRNA:   3'- gCGGCUgGACuaaa---GGUUG----UGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 5679 0.67 0.974568
Target:  5'- -aCCGugCUGAUcgUCAuCACGUGGUu -3'
miRNA:   3'- gcGGCugGACUAaaGGUuGUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 13814 0.66 0.989614
Target:  5'- gCGCCGcGCCUuua---CGuCACGCGGCa -3'
miRNA:   3'- -GCGGC-UGGAcuaaagGUuGUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 20471 0.67 0.981405
Target:  5'- aGCCGGCCgGGccUCCuuCAguccCGCGGUc -3'
miRNA:   3'- gCGGCUGGaCUaaAGGuuGU----GCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 24502 0.73 0.78426
Target:  5'- cCGCCGGcCCUGAgcgCCGGCcccaagaugGCGgCGGCa -3'
miRNA:   3'- -GCGGCU-GGACUaaaGGUUG---------UGC-GCCG- -5'
15753 5' -53.7 NC_004065.1 + 26011 0.73 0.773336
Target:  5'- uCGCUGACCgUGGccucggcgucgUCCAccagcggcucGCACGCGGCg -3'
miRNA:   3'- -GCGGCUGG-ACUaa---------AGGU----------UGUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 26890 0.66 0.986288
Target:  5'- cCGCCGGCCgg---UCCAgaggccgcucgaccGCACGcCGGa -3'
miRNA:   3'- -GCGGCUGGacuaaAGGU--------------UGUGC-GCCg -5'
15753 5' -53.7 NC_004065.1 + 27848 0.67 0.981405
Target:  5'- gGCCG-CCUGAa---CAuCAcCGCGGCg -3'
miRNA:   3'- gCGGCuGGACUaaagGUuGU-GCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 28210 0.66 0.986763
Target:  5'- uGCCaguucgagGACCUGAccgagacCCugUACGCGGCc -3'
miRNA:   3'- gCGG--------CUGGACUaaa----GGuuGUGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 29258 0.66 0.985129
Target:  5'- cCGCgCGACgaGAgagcgaCCGACGCGUGaGCc -3'
miRNA:   3'- -GCG-GCUGgaCUaaa---GGUUGUGCGC-CG- -5'
15753 5' -53.7 NC_004065.1 + 29774 0.69 0.938889
Target:  5'- aGCCGA-CUGAUcUCCccgacgGGCAUGCGGa -3'
miRNA:   3'- gCGGCUgGACUAaAGG------UUGUGCGCCg -5'
15753 5' -53.7 NC_004065.1 + 31841 0.69 0.95185
Target:  5'- gGCCGACCacgUGAUcguggCCGACAaguuCGgGGCc -3'
miRNA:   3'- gCGGCUGG---ACUAaa---GGUUGU----GCgCCG- -5'
15753 5' -53.7 NC_004065.1 + 32228 0.72 0.835762
Target:  5'- cCGCgGGCgCUGGUgaCCAACGCGgacacCGGCg -3'
miRNA:   3'- -GCGgCUG-GACUAaaGGUUGUGC-----GCCG- -5'
15753 5' -53.7 NC_004065.1 + 32528 0.66 0.988255
Target:  5'- gCGCCcauCCUGAUgacggccCCGuCGCGcCGGCg -3'
miRNA:   3'- -GCGGcu-GGACUAaa-----GGUuGUGC-GCCG- -5'
15753 5' -53.7 NC_004065.1 + 32823 0.66 0.987376
Target:  5'- aGCCGucggGCCgcucguccgagaaggUGAgccggUCCAGCGCGuUGGCg -3'
miRNA:   3'- gCGGC----UGG---------------ACUaa---AGGUUGUGC-GCCG- -5'
15753 5' -53.7 NC_004065.1 + 33653 0.72 0.851585
Target:  5'- gCGCuuCGACCg----UCCGGCGCGCGGg -3'
miRNA:   3'- -GCG--GCUGGacuaaAGGUUGUGCGCCg -5'
15753 5' -53.7 NC_004065.1 + 34589 0.66 0.984958
Target:  5'- -uCgGACCUG---UCCGACgacggcgACGCGGCg -3'
miRNA:   3'- gcGgCUGGACuaaAGGUUG-------UGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 34987 0.68 0.959382
Target:  5'- aCGCCGugcgcCCUGGUcaUgGACgaGCGCGGCc -3'
miRNA:   3'- -GCGGCu----GGACUAaaGgUUG--UGCGCCG- -5'
15753 5' -53.7 NC_004065.1 + 40088 0.69 0.934115
Target:  5'- gCGCCGcCCUGAcUUCgGuguugUugGCGGCc -3'
miRNA:   3'- -GCGGCuGGACUaAAGgUu----GugCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.