Results 1 - 20 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15753 | 5' | -53.7 | NC_004065.1 | + | 99686 | 0.7 | 0.912723 |
Target: 5'- cCGCUGGCCUcg--UCCAGCuuguacaucaGCGGCa -3' miRNA: 3'- -GCGGCUGGAcuaaAGGUUGug--------CGCCG- -5' |
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15753 | 5' | -53.7 | NC_004065.1 | + | 96573 | 0.72 | 0.859212 |
Target: 5'- cCGCCGACgaGccg--CGACGCGUGGCg -3' miRNA: 3'- -GCGGCUGgaCuaaagGUUGUGCGCCG- -5' |
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15753 | 5' | -53.7 | NC_004065.1 | + | 197694 | 0.72 | 0.859212 |
Target: 5'- cCGCuCGACUcGAcgUCCGACGCcgucGCGGCc -3' miRNA: 3'- -GCG-GCUGGaCUaaAGGUUGUG----CGCCG- -5' |
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15753 | 5' | -53.7 | NC_004065.1 | + | 72095 | 0.71 | 0.871724 |
Target: 5'- uGCgCGGCCUGAUcgCCAgacuggacaggaggACgguggACGCGGCg -3' miRNA: 3'- gCG-GCUGGACUAaaGGU--------------UG-----UGCGCCG- -5' |
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15753 | 5' | -53.7 | NC_004065.1 | + | 146544 | 0.71 | 0.88089 |
Target: 5'- gGUCGGCCUGc---CCGACAuCGuCGGCg -3' miRNA: 3'- gCGGCUGGACuaaaGGUUGU-GC-GCCG- -5' |
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15753 | 5' | -53.7 | NC_004065.1 | + | 118337 | 0.71 | 0.887697 |
Target: 5'- cCGCCGACg-----UCCAugGCGuCGGCg -3' miRNA: 3'- -GCGGCUGgacuaaAGGUugUGC-GCCG- -5' |
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15753 | 5' | -53.7 | NC_004065.1 | + | 149722 | 0.71 | 0.894287 |
Target: 5'- gCGCCGGCCcucgGAcucauagcggUCCAGCGCGuCGcGCa -3' miRNA: 3'- -GCGGCUGGa---CUaa--------AGGUUGUGC-GC-CG- -5' |
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15753 | 5' | -53.7 | NC_004065.1 | + | 142323 | 0.71 | 0.894287 |
Target: 5'- uCGUCGACCgcgaGGUcUCgAACGCcgGCGGCg -3' miRNA: 3'- -GCGGCUGGa---CUAaAGgUUGUG--CGCCG- -5' |
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15753 | 5' | -53.7 | NC_004065.1 | + | 64157 | 0.7 | 0.903142 |
Target: 5'- cCGCCGACCUGGUcUCggaguuacgcaaguaUAccgagaagucGCAgGCGGCg -3' miRNA: 3'- -GCGGCUGGACUAaAG---------------GU----------UGUgCGCCG- -5' |
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15753 | 5' | -53.7 | NC_004065.1 | + | 151403 | 0.72 | 0.843766 |
Target: 5'- uCGCCGACC-GcgUUCaccuCAgGCGGCg -3' miRNA: 3'- -GCGGCUGGaCuaAAGguu-GUgCGCCG- -5' |
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15753 | 5' | -53.7 | NC_004065.1 | + | 56879 | 0.73 | 0.80204 |
Target: 5'- gGCCuccGCCUGGUaUCCAGCGUGCGGa -3' miRNA: 3'- gCGGc--UGGACUAaAGGUUGUGCGCCg -5' |
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15753 | 5' | -53.7 | NC_004065.1 | + | 142924 | 0.73 | 0.79322 |
Target: 5'- aCGCCGGCCgucGAgUUCCGGCACcagGGCc -3' miRNA: 3'- -GCGGCUGGa--CUaAAGGUUGUGcg-CCG- -5' |
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15753 | 5' | -53.7 | NC_004065.1 | + | 55412 | 0.79 | 0.473034 |
Target: 5'- aGaCCGGCCUGAUgggcugUCCGGgGCGCGGg -3' miRNA: 3'- gC-GGCUGGACUAa-----AGGUUgUGCGCCg -5' |
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15753 | 5' | -53.7 | NC_004065.1 | + | 196423 | 0.77 | 0.587831 |
Target: 5'- uGCCGGCCcgcagcagcaucgUGAUgccgUCCGcCACGCGGUa -3' miRNA: 3'- gCGGCUGG-------------ACUAa---AGGUuGUGCGCCG- -5' |
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15753 | 5' | -53.7 | NC_004065.1 | + | 201003 | 0.77 | 0.59881 |
Target: 5'- aCGCCGGUCUGAcucgaggCCGcguGCGCGCGGCg -3' miRNA: 3'- -GCGGCUGGACUaaa----GGU---UGUGCGCCG- -5' |
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15753 | 5' | -53.7 | NC_004065.1 | + | 110762 | 0.75 | 0.688855 |
Target: 5'- gCGCCG-CCUGAcauauaGGCGCGCGGCc -3' miRNA: 3'- -GCGGCuGGACUaaagg-UUGUGCGCCG- -5' |
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15753 | 5' | -53.7 | NC_004065.1 | + | 26011 | 0.73 | 0.773336 |
Target: 5'- uCGCUGACCgUGGccucggcgucgUCCAccagcggcucGCACGCGGCg -3' miRNA: 3'- -GCGGCUGG-ACUaa---------AGGU----------UGUGCGCCG- -5' |
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15753 | 5' | -53.7 | NC_004065.1 | + | 198546 | 0.73 | 0.775169 |
Target: 5'- aGCCGcACCaGG--UCC-GCGCGCGGCa -3' miRNA: 3'- gCGGC-UGGaCUaaAGGuUGUGCGCCG- -5' |
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15753 | 5' | -53.7 | NC_004065.1 | + | 100125 | 0.73 | 0.775169 |
Target: 5'- cCGCCaGGCCccGAUcagggUCCGccgcaGCGCGCGGCa -3' miRNA: 3'- -GCGG-CUGGa-CUAa----AGGU-----UGUGCGCCG- -5' |
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15753 | 5' | -53.7 | NC_004065.1 | + | 24502 | 0.73 | 0.78426 |
Target: 5'- cCGCCGGcCCUGAgcgCCGGCcccaagaugGCGgCGGCa -3' miRNA: 3'- -GCGGCU-GGACUaaaGGUUG---------UGC-GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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