miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15754 3' -54.9 NC_004065.1 + 146758 0.66 0.974278
Target:  5'- uGGGCGUCG-GCgGCg--UCUGCcGCAu -3'
miRNA:   3'- -UCUGCAGUgCGgCGaaaAGACGcCGU- -5'
15754 3' -54.9 NC_004065.1 + 105118 0.66 0.974278
Target:  5'- cGACGaCGUGCCGCUggac-GCGGCGc -3'
miRNA:   3'- uCUGCaGUGCGGCGAaaagaCGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 94377 0.66 0.974278
Target:  5'- -cGCGUUACgGCCGCggcgagCUGuCGGCu -3'
miRNA:   3'- ucUGCAGUG-CGGCGaaaa--GAC-GCCGu -5'
15754 3' -54.9 NC_004065.1 + 151358 0.66 0.974019
Target:  5'- cGGGCGcCGCggcgccgGCCGCUgcgCUgGCGGCc -3'
miRNA:   3'- -UCUGCaGUG-------CGGCGAaaaGA-CGCCGu -5'
15754 3' -54.9 NC_004065.1 + 110949 0.66 0.971601
Target:  5'- cGugGUCAUGCCGCgcaccgUGCaGCu -3'
miRNA:   3'- uCugCAGUGCGGCGaaaag-ACGcCGu -5'
15754 3' -54.9 NC_004065.1 + 173312 0.66 0.971601
Target:  5'- uGcCGcCGcCGCCGCcg--CUGCGGCGg -3'
miRNA:   3'- uCuGCaGU-GCGGCGaaaaGACGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 173875 0.66 0.96873
Target:  5'- cGcCGUCACGCCGUg--UgUGUGGg- -3'
miRNA:   3'- uCuGCAGUGCGGCGaaaAgACGCCgu -5'
15754 3' -54.9 NC_004065.1 + 47306 0.66 0.96873
Target:  5'- cGGCGUCGC-CCGUgaggccgaUCcGCGGCGg -3'
miRNA:   3'- uCUGCAGUGcGGCGaaa-----AGaCGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 16476 0.66 0.96873
Target:  5'- uGAcCGUCACGUgGCUcac--GCGGCAg -3'
miRNA:   3'- uCU-GCAGUGCGgCGAaaagaCGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 149710 0.66 0.96873
Target:  5'- aAGGCGUCGaucucguuCGCCGCaccgcaUGCGGUu -3'
miRNA:   3'- -UCUGCAGU--------GCGGCGaaaag-ACGCCGu -5'
15754 3' -54.9 NC_004065.1 + 98853 0.66 0.96873
Target:  5'- aGGGgGUCggucauauccagACGCCGCUcuacggGCGGCAg -3'
miRNA:   3'- -UCUgCAG------------UGCGGCGAaaaga-CGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 200322 0.66 0.96873
Target:  5'- cGGCGUC-CGCCGCUcgac--CGGCGa -3'
miRNA:   3'- uCUGCAGuGCGGCGAaaagacGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 178889 0.66 0.96873
Target:  5'- uGGAaGUCGCGCCGCUacg-UGCcGCAg -3'
miRNA:   3'- -UCUgCAGUGCGGCGAaaagACGcCGU- -5'
15754 3' -54.9 NC_004065.1 + 132527 0.66 0.965657
Target:  5'- gGGGUGaUC-CGCCGCagaucgCUGCGGCAc -3'
miRNA:   3'- -UCUGC-AGuGCGGCGaaaa--GACGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 30461 0.66 0.965657
Target:  5'- cGGCGUCugGaCCGCggcacgaUGgGGCGc -3'
miRNA:   3'- uCUGCAGugC-GGCGaaaag--ACgCCGU- -5'
15754 3' -54.9 NC_004065.1 + 24837 0.66 0.964696
Target:  5'- gAGACG-CACGCgGCgcccgauguugGCGGCGa -3'
miRNA:   3'- -UCUGCaGUGCGgCGaaaaga-----CGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 67108 0.66 0.964371
Target:  5'- cGACGUCgcuggACGCCGUgcuggacaGCGGCGc -3'
miRNA:   3'- uCUGCAG-----UGCGGCGaaaaga--CGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 109981 0.66 0.962379
Target:  5'- cGACGUCcuggcgcucuggACGCUGCgccUCUuCGGCAa -3'
miRNA:   3'- uCUGCAG------------UGCGGCGaaaAGAcGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 31378 0.66 0.962379
Target:  5'- cGGACGaCACGCUGCaccug-GUGGCGc -3'
miRNA:   3'- -UCUGCaGUGCGGCGaaaagaCGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 148849 0.67 0.958889
Target:  5'- gAGGCGgC-CGCCGCga-UCgaggagGCGGCGg -3'
miRNA:   3'- -UCUGCaGuGCGGCGaaaAGa-----CGCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.