miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15754 3' -54.9 NC_004065.1 + 153455 1.08 0.005808
Target:  5'- cAGACGUCACGCCGCUUUUCUGCGGCAu -3'
miRNA:   3'- -UCUGCAGUGCGGCGAAAAGACGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 229578 0.79 0.373893
Target:  5'- cGGACGUUACGCCGCgagg--GCGGCu -3'
miRNA:   3'- -UCUGCAGUGCGGCGaaaagaCGCCGu -5'
15754 3' -54.9 NC_004065.1 + 69466 0.77 0.459867
Target:  5'- cAGAUGUCGCGCCGg----CUGCGGUAc -3'
miRNA:   3'- -UCUGCAGUGCGGCgaaaaGACGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 108926 0.75 0.575104
Target:  5'- cGACGaaagCGCGCUGCgc--CUGCGGCAg -3'
miRNA:   3'- uCUGCa---GUGCGGCGaaaaGACGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 196731 0.74 0.635402
Target:  5'- cGACGUCGCGcCCGCUgUUCUcCuGGCAg -3'
miRNA:   3'- uCUGCAGUGC-GGCGAaAAGAcG-CCGU- -5'
15754 3' -54.9 NC_004065.1 + 63871 0.73 0.675643
Target:  5'- cAGACGUCgGCGCCGCUg--CcGcCGGCGc -3'
miRNA:   3'- -UCUGCAG-UGCGGCGAaaaGaC-GCCGU- -5'
15754 3' -54.9 NC_004065.1 + 78245 0.73 0.696582
Target:  5'- aGGACGUcCAUGCCGCgcugcacgucccgaUUCUGCGuGCGg -3'
miRNA:   3'- -UCUGCA-GUGCGGCGaa------------AAGACGC-CGU- -5'
15754 3' -54.9 NC_004065.1 + 61846 0.72 0.772609
Target:  5'- aAGGCGUCGCGCCGCUg-UC-GCGccccGCGc -3'
miRNA:   3'- -UCUGCAGUGCGGCGAaaAGaCGC----CGU- -5'
15754 3' -54.9 NC_004065.1 + 106142 0.71 0.781781
Target:  5'- cGACGUgCACGgCGCac--CUGCGGCGc -3'
miRNA:   3'- uCUGCA-GUGCgGCGaaaaGACGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 166142 0.7 0.833782
Target:  5'- gAGACGUCgGCGCCGgCgg--CaGCGGCGc -3'
miRNA:   3'- -UCUGCAG-UGCGGC-GaaaaGaCGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 162183 0.7 0.840267
Target:  5'- -aGCGUCuuCGCCGUgcccuucugCUGCGGCGg -3'
miRNA:   3'- ucUGCAGu-GCGGCGaaaa-----GACGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 165495 0.7 0.84187
Target:  5'- cGcCGUCGCGCCGCag--CUGCuGCGu -3'
miRNA:   3'- uCuGCAGUGCGGCGaaaaGACGcCGU- -5'
15754 3' -54.9 NC_004065.1 + 169544 0.7 0.849772
Target:  5'- aAGACGcCGcCGCCGUcucggUUUCUGCGcGCu -3'
miRNA:   3'- -UCUGCaGU-GCGGCGa----AAAGACGC-CGu -5'
15754 3' -54.9 NC_004065.1 + 127620 0.7 0.85288
Target:  5'- cGGCGcucuacgugcaccgcUCGCGCUGCcg--CUGCGGCGc -3'
miRNA:   3'- uCUGC---------------AGUGCGGCGaaaaGACGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 59545 0.7 0.864997
Target:  5'- cAGACGaagagCuCGCCGagcggUCUGCGGCGg -3'
miRNA:   3'- -UCUGCa----GuGCGGCgaaa-AGACGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 90006 0.69 0.872306
Target:  5'- cGACGgagC-CGUCGCUUcUCgGCGGCGu -3'
miRNA:   3'- uCUGCa--GuGCGGCGAAaAGaCGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 61699 0.69 0.872306
Target:  5'- -cGCGUCACGuCCGCggcguaGCGGCGg -3'
miRNA:   3'- ucUGCAGUGC-GGCGaaaagaCGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 209862 0.69 0.879406
Target:  5'- gAGACGUC-CGCCGCaUggCUGacacugGGCAc -3'
miRNA:   3'- -UCUGCAGuGCGGCGaAaaGACg-----CCGU- -5'
15754 3' -54.9 NC_004065.1 + 138401 0.69 0.879406
Target:  5'- uGAcCGUCGa-CCGCgacUUCUGCGGCGc -3'
miRNA:   3'- uCU-GCAGUgcGGCGaa-AAGACGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 96992 0.69 0.892961
Target:  5'- --cCGUCGCGCUGCUgcgacgUCUGCuGCc -3'
miRNA:   3'- ucuGCAGUGCGGCGAaa----AGACGcCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.