miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15754 3' -54.9 NC_004065.1 + 59324 0.67 0.958889
Target:  5'- cGGCaaUCGCGCCGCgg----GCGGCGu -3'
miRNA:   3'- uCUGc-AGUGCGGCGaaaagaCGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 148849 0.67 0.958889
Target:  5'- gAGGCGgC-CGCCGCga-UCgaggagGCGGCGg -3'
miRNA:   3'- -UCUGCaGuGCGGCGaaaAGa-----CGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 89443 0.67 0.958528
Target:  5'- aGGGCGcCcuucuugaagaagACGCUGC---UCUGCGGCGu -3'
miRNA:   3'- -UCUGCaG-------------UGCGGCGaaaAGACGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 84001 0.67 0.955182
Target:  5'- uGACGUCGCccGCCaGCUUg---GCGGUg -3'
miRNA:   3'- uCUGCAGUG--CGG-CGAAaagaCGCCGu -5'
15754 3' -54.9 NC_004065.1 + 124464 0.67 0.955182
Target:  5'- cGACGgCGCGCCGUgccgCUGCGcCGg -3'
miRNA:   3'- uCUGCaGUGCGGCGaaaaGACGCcGU- -5'
15754 3' -54.9 NC_004065.1 + 152833 0.67 0.955182
Target:  5'- gGGGCG-C-CGCCGCgcacUUGUGGCAc -3'
miRNA:   3'- -UCUGCaGuGCGGCGaaaaGACGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 115883 0.67 0.955182
Target:  5'- -aGCGUCGCGUCuaauacUCUGCGGCu -3'
miRNA:   3'- ucUGCAGUGCGGcgaaa-AGACGCCGu -5'
15754 3' -54.9 NC_004065.1 + 175367 0.67 0.951256
Target:  5'- uGGugGUCACGaa-----UCUGCGGCAg -3'
miRNA:   3'- -UCugCAGUGCggcgaaaAGACGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 108803 0.67 0.951256
Target:  5'- uGGCGUgGCgGCCGUUcagCcGCGGCAa -3'
miRNA:   3'- uCUGCAgUG-CGGCGAaaaGaCGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 189466 0.67 0.949623
Target:  5'- cGACGgUACGaCCGCguauaaucuaCUGCGGCGg -3'
miRNA:   3'- uCUGCaGUGC-GGCGaaaa------GACGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 147437 0.67 0.947106
Target:  5'- cGGCGUCAUGgaCGCcaacgagUUCUGCGGgAu -3'
miRNA:   3'- uCUGCAGUGCg-GCGaa-----AAGACGCCgU- -5'
15754 3' -54.9 NC_004065.1 + 130606 0.67 0.946249
Target:  5'- cGGCGUC-UGCCGCUcgggccccugCUGCGaGCGc -3'
miRNA:   3'- uCUGCAGuGCGGCGAaaa-------GACGC-CGU- -5'
15754 3' -54.9 NC_004065.1 + 86562 0.67 0.942729
Target:  5'- cGGGCGUCACGacgaCGCaga---GCGGCAc -3'
miRNA:   3'- -UCUGCAGUGCg---GCGaaaagaCGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 29004 0.67 0.942729
Target:  5'- uGGCGagGCGCCGCgcgcacGCGGCc -3'
miRNA:   3'- uCUGCagUGCGGCGaaaagaCGCCGu -5'
15754 3' -54.9 NC_004065.1 + 24100 0.67 0.942729
Target:  5'- aGGACGUCcaugGCGCCGacg-UCggccucgGCGGCc -3'
miRNA:   3'- -UCUGCAG----UGCGGCgaaaAGa------CGCCGu -5'
15754 3' -54.9 NC_004065.1 + 109813 0.67 0.942729
Target:  5'- cGACGagaacgcccUCGuCGCCGUccugCUGCGGCGg -3'
miRNA:   3'- uCUGC---------AGU-GCGGCGaaaaGACGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 4449 0.67 0.942279
Target:  5'- aGGACGcCACGCCGUUUcuuaagaagUCUGUgaaucaaaagacuGGCGa -3'
miRNA:   3'- -UCUGCaGUGCGGCGAAa--------AGACG-------------CCGU- -5'
15754 3' -54.9 NC_004065.1 + 165118 0.67 0.941372
Target:  5'- cGGCGUCccgcccggcgacugGCGCCGCUcUUCUccgacgcgcgccGCGGUc -3'
miRNA:   3'- uCUGCAG--------------UGCGGCGAaAAGA------------CGCCGu -5'
15754 3' -54.9 NC_004065.1 + 188971 0.67 0.940915
Target:  5'- cGGCuUCGuCGCCGCgcggcccgagcUCUGCGGCu -3'
miRNA:   3'- uCUGcAGU-GCGGCGaaa--------AGACGCCGu -5'
15754 3' -54.9 NC_004065.1 + 98536 0.67 0.938124
Target:  5'- -aACGUCgggagACGCCGCccgUC-GCGGCAu -3'
miRNA:   3'- ucUGCAG-----UGCGGCGaaaAGaCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.