Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15754 | 3' | -54.9 | NC_004065.1 | + | 4449 | 0.67 | 0.942279 |
Target: 5'- aGGACGcCACGCCGUUUcuuaagaagUCUGUgaaucaaaagacuGGCGa -3' miRNA: 3'- -UCUGCaGUGCGGCGAAa--------AGACG-------------CCGU- -5' |
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15754 | 3' | -54.9 | NC_004065.1 | + | 16476 | 0.66 | 0.96873 |
Target: 5'- uGAcCGUCACGUgGCUcac--GCGGCAg -3' miRNA: 3'- uCU-GCAGUGCGgCGAaaagaCGCCGU- -5' |
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15754 | 3' | -54.9 | NC_004065.1 | + | 24100 | 0.67 | 0.942729 |
Target: 5'- aGGACGUCcaugGCGCCGacg-UCggccucgGCGGCc -3' miRNA: 3'- -UCUGCAG----UGCGGCgaaaAGa------CGCCGu -5' |
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15754 | 3' | -54.9 | NC_004065.1 | + | 24837 | 0.66 | 0.964696 |
Target: 5'- gAGACG-CACGCgGCgcccgauguugGCGGCGa -3' miRNA: 3'- -UCUGCaGUGCGgCGaaaaga-----CGCCGU- -5' |
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15754 | 3' | -54.9 | NC_004065.1 | + | 27635 | 0.69 | 0.898136 |
Target: 5'- aAGGCGcUGCGCUGCgcgggggugCUGCGGCc -3' miRNA: 3'- -UCUGCaGUGCGGCGaaaa-----GACGCCGu -5' |
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15754 | 3' | -54.9 | NC_004065.1 | + | 29004 | 0.67 | 0.942729 |
Target: 5'- uGGCGagGCGCCGCgcgcacGCGGCc -3' miRNA: 3'- uCUGCagUGCGGCGaaaagaCGCCGu -5' |
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15754 | 3' | -54.9 | NC_004065.1 | + | 30461 | 0.66 | 0.965657 |
Target: 5'- cGGCGUCugGaCCGCggcacgaUGgGGCGc -3' miRNA: 3'- uCUGCAGugC-GGCGaaaag--ACgCCGU- -5' |
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15754 | 3' | -54.9 | NC_004065.1 | + | 31378 | 0.66 | 0.962379 |
Target: 5'- cGGACGaCACGCUGCaccug-GUGGCGc -3' miRNA: 3'- -UCUGCaGUGCGGCGaaaagaCGCCGU- -5' |
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15754 | 3' | -54.9 | NC_004065.1 | + | 34999 | 0.67 | 0.938124 |
Target: 5'- cGACGUCGuCGCC-Cg--UCguugGCGGCGc -3' miRNA: 3'- uCUGCAGU-GCGGcGaaaAGa---CGCCGU- -5' |
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15754 | 3' | -54.9 | NC_004065.1 | + | 45521 | 0.68 | 0.922919 |
Target: 5'- cGGACgGUCuacgccacccgGCGCCGCggcggCgGCGGCAg -3' miRNA: 3'- -UCUG-CAG-----------UGCGGCGaaaa-GaCGCCGU- -5' |
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15754 | 3' | -54.9 | NC_004065.1 | + | 47306 | 0.66 | 0.96873 |
Target: 5'- cGGCGUCGC-CCGUgaggccgaUCcGCGGCGg -3' miRNA: 3'- uCUGCAGUGcGGCGaaa-----AGaCGCCGU- -5' |
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15754 | 3' | -54.9 | NC_004065.1 | + | 51112 | 0.68 | 0.917386 |
Target: 5'- cGACGcCguucuGCGCCGauug-CUGCGGCAc -3' miRNA: 3'- uCUGCaG-----UGCGGCgaaaaGACGCCGU- -5' |
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15754 | 3' | -54.9 | NC_004065.1 | + | 59324 | 0.67 | 0.958889 |
Target: 5'- cGGCaaUCGCGCCGCgg----GCGGCGu -3' miRNA: 3'- uCUGc-AGUGCGGCGaaaagaCGCCGU- -5' |
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15754 | 3' | -54.9 | NC_004065.1 | + | 59545 | 0.7 | 0.864997 |
Target: 5'- cAGACGaagagCuCGCCGagcggUCUGCGGCGg -3' miRNA: 3'- -UCUGCa----GuGCGGCgaaa-AGACGCCGU- -5' |
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15754 | 3' | -54.9 | NC_004065.1 | + | 61699 | 0.69 | 0.872306 |
Target: 5'- -cGCGUCACGuCCGCggcguaGCGGCGg -3' miRNA: 3'- ucUGCAGUGC-GGCGaaaagaCGCCGU- -5' |
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15754 | 3' | -54.9 | NC_004065.1 | + | 61846 | 0.72 | 0.772609 |
Target: 5'- aAGGCGUCGCGCCGCUg-UC-GCGccccGCGc -3' miRNA: 3'- -UCUGCAGUGCGGCGAaaAGaCGC----CGU- -5' |
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15754 | 3' | -54.9 | NC_004065.1 | + | 62109 | 0.68 | 0.933287 |
Target: 5'- cGGuCGUUACGCuCGCgggag-GCGGCAu -3' miRNA: 3'- -UCuGCAGUGCG-GCGaaaagaCGCCGU- -5' |
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15754 | 3' | -54.9 | NC_004065.1 | + | 63871 | 0.73 | 0.675643 |
Target: 5'- cAGACGUCgGCGCCGCUg--CcGcCGGCGc -3' miRNA: 3'- -UCUGCAG-UGCGGCGAaaaGaC-GCCGU- -5' |
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15754 | 3' | -54.9 | NC_004065.1 | + | 67108 | 0.66 | 0.964371 |
Target: 5'- cGACGUCgcuggACGCCGUgcuggacaGCGGCGc -3' miRNA: 3'- uCUGCAG-----UGCGGCGaaaaga--CGCCGU- -5' |
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15754 | 3' | -54.9 | NC_004065.1 | + | 69466 | 0.77 | 0.459867 |
Target: 5'- cAGAUGUCGCGCCGg----CUGCGGUAc -3' miRNA: 3'- -UCUGCAGUGCGGCgaaaaGACGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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