miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15754 3' -54.9 NC_004065.1 + 34999 0.67 0.938124
Target:  5'- cGACGUCGuCGCC-Cg--UCguugGCGGCGc -3'
miRNA:   3'- uCUGCAGU-GCGGcGaaaAGa---CGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 88692 0.69 0.899408
Target:  5'- cGACGUcCGCGUCGUacaugacgUUCUcGCGGCGc -3'
miRNA:   3'- uCUGCA-GUGCGGCGaa------AAGA-CGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 124900 0.69 0.899408
Target:  5'- cGAUGU-GCGCCGCg--UCcaGCGGCAc -3'
miRNA:   3'- uCUGCAgUGCGGCGaaaAGa-CGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 118113 0.68 0.915109
Target:  5'- uGGCGUCucucguCGCCGCgcggacgaggUUGCGGUAg -3'
miRNA:   3'- uCUGCAGu-----GCGGCGaaaa------GACGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 51112 0.68 0.917386
Target:  5'- cGACGcCguucuGCGCCGauug-CUGCGGCAc -3'
miRNA:   3'- uCUGCaG-----UGCGGCgaaaaGACGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 45521 0.68 0.922919
Target:  5'- cGGACgGUCuacgccacccgGCGCCGCggcggCgGCGGCAg -3'
miRNA:   3'- -UCUG-CAG-----------UGCGGCGaaaa-GaCGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 152916 0.68 0.928219
Target:  5'- cGAUGUCgGCGgCGCUgccgCcGCGGCAa -3'
miRNA:   3'- uCUGCAG-UGCgGCGAaaa-GaCGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 110166 0.68 0.933287
Target:  5'- gGGACGUCuuCcCCGacc-UCUGCGGCGg -3'
miRNA:   3'- -UCUGCAGu-GcGGCgaaaAGACGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 62109 0.68 0.933287
Target:  5'- cGGuCGUUACGCuCGCgggag-GCGGCAu -3'
miRNA:   3'- -UCuGCAGUGCG-GCGaaaagaCGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 138779 0.69 0.899408
Target:  5'- gAGGCcgugcUCugGCUGCUgUUCUGCGGa- -3'
miRNA:   3'- -UCUGc----AGugCGGCGAaAAGACGCCgu -5'
15754 3' -54.9 NC_004065.1 + 27635 0.69 0.898136
Target:  5'- aAGGCGcUGCGCUGCgcgggggugCUGCGGCc -3'
miRNA:   3'- -UCUGCaGUGCGGCGaaaa-----GACGCCGu -5'
15754 3' -54.9 NC_004065.1 + 96992 0.69 0.892961
Target:  5'- --cCGUCGCGCUGCUgcgacgUCUGCuGCc -3'
miRNA:   3'- ucuGCAGUGCGGCGAaa----AGACGcCGu -5'
15754 3' -54.9 NC_004065.1 + 69466 0.77 0.459867
Target:  5'- cAGAUGUCGCGCCGg----CUGCGGUAc -3'
miRNA:   3'- -UCUGCAGUGCGGCgaaaaGACGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 108926 0.75 0.575104
Target:  5'- cGACGaaagCGCGCUGCgc--CUGCGGCAg -3'
miRNA:   3'- uCUGCa---GUGCGGCGaaaaGACGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 196731 0.74 0.635402
Target:  5'- cGACGUCGCGcCCGCUgUUCUcCuGGCAg -3'
miRNA:   3'- uCUGCAGUGC-GGCGAaAAGAcG-CCGU- -5'
15754 3' -54.9 NC_004065.1 + 61846 0.72 0.772609
Target:  5'- aAGGCGUCGCGCCGCUg-UC-GCGccccGCGc -3'
miRNA:   3'- -UCUGCAGUGCGGCGAaaAGaCGC----CGU- -5'
15754 3' -54.9 NC_004065.1 + 166142 0.7 0.833782
Target:  5'- gAGACGUCgGCGCCGgCgg--CaGCGGCGc -3'
miRNA:   3'- -UCUGCAG-UGCGGC-GaaaaGaCGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 169544 0.7 0.849772
Target:  5'- aAGACGcCGcCGCCGUcucggUUUCUGCGcGCu -3'
miRNA:   3'- -UCUGCaGU-GCGGCGa----AAAGACGC-CGu -5'
15754 3' -54.9 NC_004065.1 + 127620 0.7 0.85288
Target:  5'- cGGCGcucuacgugcaccgcUCGCGCUGCcg--CUGCGGCGc -3'
miRNA:   3'- uCUGC---------------AGUGCGGCGaaaaGACGCCGU- -5'
15754 3' -54.9 NC_004065.1 + 61699 0.69 0.872306
Target:  5'- -cGCGUCACGuCCGCggcguaGCGGCGg -3'
miRNA:   3'- ucUGCAGUGC-GGCGaaaagaCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.