miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15754 5' -57 NC_004065.1 + 129872 0.66 0.951472
Target:  5'- aGGUGUucGACcuGUGCc-GCGCGCUGCg -3'
miRNA:   3'- -CCACG--CUGucCACGcuUGUGCGGCGg -5'
15754 5' -57 NC_004065.1 + 95779 0.66 0.951472
Target:  5'- cGUGCGGCucGGUGaCGGGuucCAgGgCGCCa -3'
miRNA:   3'- cCACGCUGu-CCAC-GCUU---GUgCgGCGG- -5'
15754 5' -57 NC_004065.1 + 42502 0.66 0.951472
Target:  5'- gGGUcGgGAacGGUaCGAACugGCCGCUc -3'
miRNA:   3'- -CCA-CgCUguCCAcGCUUGugCGGCGG- -5'
15754 5' -57 NC_004065.1 + 104171 0.66 0.951472
Target:  5'- cGGUcGCcGCuucGGUGcCGGAUACGaCCGUCa -3'
miRNA:   3'- -CCA-CGcUGu--CCAC-GCUUGUGC-GGCGG- -5'
15754 5' -57 NC_004065.1 + 188904 0.66 0.951472
Target:  5'- --cGCGGCAGGUGC--GCGgGUCuCCg -3'
miRNA:   3'- ccaCGCUGUCCACGcuUGUgCGGcGG- -5'
15754 5' -57 NC_004065.1 + 25374 0.66 0.951472
Target:  5'- cGGUGCuauauucucccaGugGGG-GCGGACAgGgCGCa -3'
miRNA:   3'- -CCACG------------CugUCCaCGCUUGUgCgGCGg -5'
15754 5' -57 NC_004065.1 + 42060 0.66 0.95108
Target:  5'- cGUGCuGGCGcuGGUGUggcugaccucgcuGAuguGCGCGUCGCCg -3'
miRNA:   3'- cCACG-CUGU--CCACG-------------CU---UGUGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 152800 0.66 0.95108
Target:  5'- cGGUGgccaCGAuCAGcguggccaucgccGUGCGGG-GCGCCGCCg -3'
miRNA:   3'- -CCAC----GCU-GUC-------------CACGCUUgUGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 196323 0.66 0.950291
Target:  5'- cGGUGaucgGGCAGGUGgGGACAgaugacucgcaucuCGCagcgGCCc -3'
miRNA:   3'- -CCACg---CUGUCCACgCUUGU--------------GCGg---CGG- -5'
15754 5' -57 NC_004065.1 + 32652 0.66 0.949091
Target:  5'- aGGUGUGcaggaggaguuccucGCGGGcGCGGuucuCGCGCagCGCCu -3'
miRNA:   3'- -CCACGC---------------UGUCCaCGCUu---GUGCG--GCGG- -5'
15754 5' -57 NC_004065.1 + 194788 0.66 0.949091
Target:  5'- gGGUcGCG-CAGG-GCGAucgucgagccccugaACGCcguggcggugGCCGCCa -3'
miRNA:   3'- -CCA-CGCuGUCCaCGCU---------------UGUG----------CGGCGG- -5'
15754 5' -57 NC_004065.1 + 134644 0.66 0.947461
Target:  5'- --cGCGACAGGcucgUGcCGGuACACGUCGUUu -3'
miRNA:   3'- ccaCGCUGUCC----AC-GCU-UGUGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 109247 0.66 0.947461
Target:  5'- cGGUaGCGGCGucGGUGaCGAugACGaCuCGCg -3'
miRNA:   3'- -CCA-CGCUGU--CCAC-GCUugUGC-G-GCGg -5'
15754 5' -57 NC_004065.1 + 143451 0.66 0.947461
Target:  5'- -cUGCGACgAGGUGCc-GCucuGCGUCGUCg -3'
miRNA:   3'- ccACGCUG-UCCACGcuUG---UGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 146579 0.66 0.947461
Target:  5'- aGGUGCcGCucGUGCcgGAGCccggcaACGCCGUCg -3'
miRNA:   3'- -CCACGcUGucCACG--CUUG------UGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 41269 0.66 0.947461
Target:  5'- cGGUcGCGAUcgcccuGGUGgGcuu-CGCCGCCg -3'
miRNA:   3'- -CCA-CGCUGu-----CCACgCuuguGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 102494 0.66 0.947461
Target:  5'- aGGgcacgGCGACGGG-GCccauGAGCAgGCgGCa -3'
miRNA:   3'- -CCa----CGCUGUCCaCG----CUUGUgCGgCGg -5'
15754 5' -57 NC_004065.1 + 89983 0.66 0.947461
Target:  5'- aGGgacGaCGACGGGaGCGAACccgacggaGCCGUCg -3'
miRNA:   3'- -CCa--C-GCUGUCCaCGCUUGug------CGGCGG- -5'
15754 5' -57 NC_004065.1 + 68584 0.66 0.947461
Target:  5'- --cGCGGCGGcG-GCGAuccagagcgccgACACGUCGCa -3'
miRNA:   3'- ccaCGCUGUC-CaCGCU------------UGUGCGGCGg -5'
15754 5' -57 NC_004065.1 + 159780 0.66 0.947461
Target:  5'- uGUGCGuCAGG-GCGGucaggagguGCGCGaUCGUCa -3'
miRNA:   3'- cCACGCuGUCCaCGCU---------UGUGC-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.