miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15754 5' -57 NC_004065.1 + 66629 0.66 0.934142
Target:  5'- gGGcUGCGGCGcuGcGUgGCGGACGCGCugaCGCUg -3'
miRNA:   3'- -CC-ACGCUGU--C-CA-CGCUUGUGCG---GCGG- -5'
15754 5' -57 NC_004065.1 + 146579 0.66 0.947461
Target:  5'- aGGUGCcGCucGUGCcgGAGCccggcaACGCCGUCg -3'
miRNA:   3'- -CCACGcUGucCACG--CUUG------UGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 97676 0.66 0.937424
Target:  5'- --gGCG-CAGGaUGUGAuacucgcggucgcuGC-CGCCGCCg -3'
miRNA:   3'- ccaCGCuGUCC-ACGCU--------------UGuGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 27831 0.66 0.943237
Target:  5'- uGUGCcuGCGGGUGCu--CG-GCCGCCu -3'
miRNA:   3'- cCACGc-UGUCCACGcuuGUgCGGCGG- -5'
15754 5' -57 NC_004065.1 + 129872 0.66 0.951472
Target:  5'- aGGUGUucGACcuGUGCc-GCGCGCUGCg -3'
miRNA:   3'- -CCACG--CUGucCACGcuUGUGCGGCGg -5'
15754 5' -57 NC_004065.1 + 149645 0.66 0.938798
Target:  5'- cGU-CGGCAGGcccUGC--ACGCGCCGCa -3'
miRNA:   3'- cCAcGCUGUCC---ACGcuUGUGCGGCGg -5'
15754 5' -57 NC_004065.1 + 143451 0.66 0.947461
Target:  5'- -cUGCGACgAGGUGCc-GCucuGCGUCGUCg -3'
miRNA:   3'- ccACGCUG-UCCACGcuUG---UGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 86172 0.66 0.947461
Target:  5'- cGUGCGGCAGGaUGCcGGCguuaucgcagGCGUagGCCa -3'
miRNA:   3'- cCACGCUGUCC-ACGcUUG----------UGCGg-CGG- -5'
15754 5' -57 NC_004065.1 + 64903 0.66 0.938798
Target:  5'- --aGCGGCGccagucgccGG-GCGGG-ACGCCGCCu -3'
miRNA:   3'- ccaCGCUGU---------CCaCGCUUgUGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 30874 0.66 0.938798
Target:  5'- --cGaCGGCGGGUuCGAGCGC-CCGCa -3'
miRNA:   3'- ccaC-GCUGUCCAcGCUUGUGcGGCGg -5'
15754 5' -57 NC_004065.1 + 229665 0.66 0.934142
Target:  5'- --aGUGGCAGGUggGCGucggggcGCGCGuCCGCUc -3'
miRNA:   3'- ccaCGCUGUCCA--CGCu------UGUGC-GGCGG- -5'
15754 5' -57 NC_004065.1 + 31693 0.66 0.934142
Target:  5'- aGGUGCGuC-GGUGCccGAGCGUGCCGa- -3'
miRNA:   3'- -CCACGCuGuCCACG--CUUGUGCGGCgg -5'
15754 5' -57 NC_004065.1 + 194788 0.66 0.949091
Target:  5'- gGGUcGCG-CAGG-GCGAucgucgagccccugaACGCcguggcggugGCCGCCa -3'
miRNA:   3'- -CCA-CGCuGUCCaCGCU---------------UGUG----------CGGCGG- -5'
15754 5' -57 NC_004065.1 + 108182 0.66 0.943237
Target:  5'- --cGCGGgucgGGGUGCGGACGuCGCaggGCCc -3'
miRNA:   3'- ccaCGCUg---UCCACGCUUGU-GCGg--CGG- -5'
15754 5' -57 NC_004065.1 + 68584 0.66 0.947461
Target:  5'- --cGCGGCGGcG-GCGAuccagagcgccgACACGUCGCa -3'
miRNA:   3'- ccaCGCUGUC-CaCGCU------------UGUGCGGCGg -5'
15754 5' -57 NC_004065.1 + 197617 0.66 0.934142
Target:  5'- --cGUGGCAGGUcaacGCGAAgUACGUCGgCg -3'
miRNA:   3'- ccaCGCUGUCCA----CGCUU-GUGCGGCgG- -5'
15754 5' -57 NC_004065.1 + 134644 0.66 0.947461
Target:  5'- --cGCGACAGGcucgUGcCGGuACACGUCGUUu -3'
miRNA:   3'- ccaCGCUGUCC----AC-GCU-UGUGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 124172 0.66 0.947461
Target:  5'- ---cCGACuccaGGGUGUGcgcGCAgGCCGCCg -3'
miRNA:   3'- ccacGCUG----UCCACGCu--UGUgCGGCGG- -5'
15754 5' -57 NC_004065.1 + 109247 0.66 0.947461
Target:  5'- cGGUaGCGGCGucGGUGaCGAugACGaCuCGCg -3'
miRNA:   3'- -CCA-CGCUGU--CCAC-GCUugUGC-G-GCGg -5'
15754 5' -57 NC_004065.1 + 133393 0.66 0.943237
Target:  5'- gGGcGCGAacguGGUGUGGAUuuguuuggACGCCGUg -3'
miRNA:   3'- -CCaCGCUgu--CCACGCUUG--------UGCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.