miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15754 5' -57 NC_004065.1 + 153492 1.14 0.00196
Target:  5'- gGGUGCGACAGGUGCGAACACGCCGCCg -3'
miRNA:   3'- -CCACGCUGUCCACGCUUGUGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 202499 0.79 0.32314
Target:  5'- cGUGCGAguGGUG-GAgGCACGCCGCg -3'
miRNA:   3'- cCACGCUguCCACgCU-UGUGCGGCGg -5'
15754 5' -57 NC_004065.1 + 110185 0.79 0.32314
Target:  5'- -cUGCGGCGGccGCG-ACGCGCCGCCg -3'
miRNA:   3'- ccACGCUGUCcaCGCuUGUGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 99401 0.78 0.390945
Target:  5'- --aGCGACAGGUGCGcucgcagcaggGGCccgagcggcagACGCCGCCu -3'
miRNA:   3'- ccaCGCUGUCCACGC-----------UUG-----------UGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 163449 0.77 0.407223
Target:  5'- cGUGCGGCAGGcgcucgccaGCGAcgagaacgacucGCACGCCGCg -3'
miRNA:   3'- cCACGCUGUCCa--------CGCU------------UGUGCGGCGg -5'
15754 5' -57 NC_004065.1 + 122669 0.77 0.423919
Target:  5'- cGG-GCGGCAGGgugGUGAGCACGUCuCCc -3'
miRNA:   3'- -CCaCGCUGUCCa--CGCUUGUGCGGcGG- -5'
15754 5' -57 NC_004065.1 + 45190 0.76 0.449714
Target:  5'- ---cCGACAGGgGC-AACACGCCGCCg -3'
miRNA:   3'- ccacGCUGUCCaCGcUUGUGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 123881 0.76 0.458502
Target:  5'- --cGCGccGCAGGUGCGccguGCACGUCGUCg -3'
miRNA:   3'- ccaCGC--UGUCCACGCu---UGUGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 104556 0.76 0.46649
Target:  5'- ----gGGCAGGUGCGGccgcuguGCACGCCGCg -3'
miRNA:   3'- ccacgCUGUCCACGCU-------UGUGCGGCGg -5'
15754 5' -57 NC_004065.1 + 161844 0.76 0.467382
Target:  5'- --aGCGGCGGG-GcCGAcagcuccgucgcGCGCGCCGCCg -3'
miRNA:   3'- ccaCGCUGUCCaC-GCU------------UGUGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 185468 0.76 0.467382
Target:  5'- aGGUG-GugGuGGUGCGggUcgggaggcaGCGCCGCCa -3'
miRNA:   3'- -CCACgCugU-CCACGCuuG---------UGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 112914 0.76 0.476349
Target:  5'- aGGUGCGACaccAGG-GCGcGGCACGCuCGCg -3'
miRNA:   3'- -CCACGCUG---UCCaCGC-UUGUGCG-GCGg -5'
15754 5' -57 NC_004065.1 + 202595 0.75 0.500974
Target:  5'- cGGUGgGACgggcagaggcuGGGUGCGAugAggagucgacgacgaUGCCGCCg -3'
miRNA:   3'- -CCACgCUG-----------UCCACGCUugU--------------GCGGCGG- -5'
15754 5' -57 NC_004065.1 + 99575 0.75 0.541281
Target:  5'- uGGUGCGuCAGGUucuGgGGGCACaGCUGCUg -3'
miRNA:   3'- -CCACGCuGUCCA---CgCUUGUG-CGGCGG- -5'
15754 5' -57 NC_004065.1 + 109277 0.74 0.560402
Target:  5'- aGGaGCGGCAGGUGCuGAGCAUgacggugcgGUCGUCg -3'
miRNA:   3'- -CCaCGCUGUCCACG-CUUGUG---------CGGCGG- -5'
15754 5' -57 NC_004065.1 + 128413 0.74 0.560402
Target:  5'- --aGCGGCAGcG-GCGGcgGCGCCGCCa -3'
miRNA:   3'- ccaCGCUGUC-CaCGCUugUGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 90356 0.74 0.569068
Target:  5'- cGUGUGACAGcaGCGGccgccgcACGCGCCGCa -3'
miRNA:   3'- cCACGCUGUCcaCGCU-------UGUGCGGCGg -5'
15754 5' -57 NC_004065.1 + 58202 0.74 0.570033
Target:  5'- --gGCGACGGGcaUGCGGucaaagccCACGUCGCCg -3'
miRNA:   3'- ccaCGCUGUCC--ACGCUu-------GUGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 125100 0.74 0.579705
Target:  5'- aGGuUGCGGUA-GUGCGugUACGCCGCCg -3'
miRNA:   3'- -CC-ACGCUGUcCACGCuuGUGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 136911 0.74 0.589411
Target:  5'- uGGaa-GAC-GGUGCGAACACGCacaGCCu -3'
miRNA:   3'- -CCacgCUGuCCACGCUUGUGCGg--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.