miRNA display CGI


Results 21 - 40 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15754 5' -57 NC_004065.1 + 86172 0.66 0.947461
Target:  5'- cGUGCGGCAGGaUGCcGGCguuaucgcagGCGUagGCCa -3'
miRNA:   3'- cCACGCUGUCC-ACGcUUG----------UGCGg-CGG- -5'
15754 5' -57 NC_004065.1 + 102494 0.66 0.947461
Target:  5'- aGGgcacgGCGACGGG-GCccauGAGCAgGCgGCa -3'
miRNA:   3'- -CCa----CGCUGUCCaCG----CUUGUgCGgCGg -5'
15754 5' -57 NC_004065.1 + 41269 0.66 0.947461
Target:  5'- cGGUcGCGAUcgcccuGGUGgGcuu-CGCCGCCg -3'
miRNA:   3'- -CCA-CGCUGu-----CCACgCuuguGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 124172 0.66 0.947461
Target:  5'- ---cCGACuccaGGGUGUGcgcGCAgGCCGCCg -3'
miRNA:   3'- ccacGCUG----UCCACGCu--UGUgCGGCGG- -5'
15754 5' -57 NC_004065.1 + 210144 0.66 0.947048
Target:  5'- cGGcgGCGACGGG-GUGGaucagggucucuaGCACGCCa-- -3'
miRNA:   3'- -CCa-CGCUGUCCaCGCU-------------UGUGCGGcgg -5'
15754 5' -57 NC_004065.1 + 103778 0.66 0.947048
Target:  5'- uGG-GCGGCucgauccccgcacGGGcGUGAAgACGCcCGCCu -3'
miRNA:   3'- -CCaCGCUG-------------UCCaCGCUUgUGCG-GCGG- -5'
15754 5' -57 NC_004065.1 + 99388 0.66 0.947048
Target:  5'- cGG-GCGugGgcugccuGGcgGCGGGCGCGuuGCUg -3'
miRNA:   3'- -CCaCGCugU-------CCa-CGCUUGUGCggCGG- -5'
15754 5' -57 NC_004065.1 + 133393 0.66 0.943237
Target:  5'- gGGcGCGAacguGGUGUGGAUuuguuuggACGCCGUg -3'
miRNA:   3'- -CCaCGCUgu--CCACGCUUG--------UGCGGCGg -5'
15754 5' -57 NC_004065.1 + 64255 0.66 0.943237
Target:  5'- --aGUG-CGGGUGCcuGGACGCGUggUGCCg -3'
miRNA:   3'- ccaCGCuGUCCACG--CUUGUGCG--GCGG- -5'
15754 5' -57 NC_004065.1 + 63866 0.66 0.943237
Target:  5'- cGGUGCaGACGucgGCGc-CGCuGCCGCCg -3'
miRNA:   3'- -CCACG-CUGUccaCGCuuGUG-CGGCGG- -5'
15754 5' -57 NC_004065.1 + 35556 0.66 0.943237
Target:  5'- aGGagGCGugAGcG-GCG---GCGCCGCCg -3'
miRNA:   3'- -CCa-CGCugUC-CaCGCuugUGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 117436 0.66 0.943237
Target:  5'- -----cACGGGcacguUGCGAcgcaGCACGCCGCCc -3'
miRNA:   3'- ccacgcUGUCC-----ACGCU----UGUGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 27831 0.66 0.943237
Target:  5'- uGUGCcuGCGGGUGCu--CG-GCCGCCu -3'
miRNA:   3'- cCACGc-UGUCCACGcuuGUgCGGCGG- -5'
15754 5' -57 NC_004065.1 + 108182 0.66 0.943237
Target:  5'- --cGCGGgucgGGGUGCGGACGuCGCaggGCCc -3'
miRNA:   3'- ccaCGCUg---UCCACGCUUGU-GCGg--CGG- -5'
15754 5' -57 NC_004065.1 + 199229 0.66 0.941487
Target:  5'- cGGUGaCGACAGGUGCauuguucucguCAauCCGUCg -3'
miRNA:   3'- -CCAC-GCUGUCCACGcuu--------GUgcGGCGG- -5'
15754 5' -57 NC_004065.1 + 30874 0.66 0.938798
Target:  5'- --cGaCGGCGGGUuCGAGCGC-CCGCa -3'
miRNA:   3'- ccaC-GCUGUCCAcGCUUGUGcGGCGg -5'
15754 5' -57 NC_004065.1 + 64903 0.66 0.938798
Target:  5'- --aGCGGCGccagucgccGG-GCGGG-ACGCCGCCu -3'
miRNA:   3'- ccaCGCUGU---------CCaCGCUUgUGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 149645 0.66 0.938798
Target:  5'- cGU-CGGCAGGcccUGC--ACGCGCCGCa -3'
miRNA:   3'- cCAcGCUGUCC---ACGcuUGUGCGGCGg -5'
15754 5' -57 NC_004065.1 + 115771 0.66 0.938342
Target:  5'- cGGagGCGGCAGGguugGCGGucccggGCACggaaacuGCgGCCg -3'
miRNA:   3'- -CCa-CGCUGUCCa---CGCU------UGUG-------CGgCGG- -5'
15754 5' -57 NC_004065.1 + 97676 0.66 0.937424
Target:  5'- --gGCG-CAGGaUGUGAuacucgcggucgcuGC-CGCCGCCg -3'
miRNA:   3'- ccaCGCuGUCC-ACGCU--------------UGuGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.