miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15754 5' -57 NC_004065.1 + 116 0.69 0.838838
Target:  5'- aGUGCGAUgAGGUGgcuGCGCGCaCGUCa -3'
miRNA:   3'- cCACGCUG-UCCACgcuUGUGCG-GCGG- -5'
15754 5' -57 NC_004065.1 + 6911 0.68 0.895456
Target:  5'- --cGCGGCGGcuucagcUGCGGGCACGgccucggcguCCGCCg -3'
miRNA:   3'- ccaCGCUGUCc------ACGCUUGUGC----------GGCGG- -5'
15754 5' -57 NC_004065.1 + 7159 0.71 0.75317
Target:  5'- cGGUuucACGGGgaugGCGGACGCGCUGUCa -3'
miRNA:   3'- -CCAcgcUGUCCa---CGCUUGUGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 17287 0.69 0.830929
Target:  5'- aGGUgGUGuCGGGUGCGGcggagACAacggccucggaGCCGCCu -3'
miRNA:   3'- -CCA-CGCuGUCCACGCU-----UGUg----------CGGCGG- -5'
15754 5' -57 NC_004065.1 + 19500 0.71 0.725214
Target:  5'- --cGCGAUGGGgacgGCgGAAC-CGCUGCCg -3'
miRNA:   3'- ccaCGCUGUCCa---CG-CUUGuGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 19763 0.69 0.830929
Target:  5'- cGUGCGG-GGGUGUGGGCgACGgaGCCg -3'
miRNA:   3'- cCACGCUgUCCACGCUUG-UGCggCGG- -5'
15754 5' -57 NC_004065.1 + 21684 0.68 0.868697
Target:  5'- ---aCGGCAGGUaGCG-ACGCaGUCGCCg -3'
miRNA:   3'- ccacGCUGUCCA-CGCuUGUG-CGGCGG- -5'
15754 5' -57 NC_004065.1 + 23610 0.67 0.90163
Target:  5'- cGGUGaggcgGGCAGGcggGUGGACGgGCgGCUg -3'
miRNA:   3'- -CCACg----CUGUCCa--CGCUUGUgCGgCGG- -5'
15754 5' -57 NC_004065.1 + 24260 0.67 0.90163
Target:  5'- uGGUGCGGCAcucgGUGAGCucacggcuCGCgGCCc -3'
miRNA:   3'- -CCACGCUGUcca-CGCUUGu-------GCGgCGG- -5'
15754 5' -57 NC_004065.1 + 25374 0.66 0.951472
Target:  5'- cGGUGCuauauucucccaGugGGG-GCGGACAgGgCGCa -3'
miRNA:   3'- -CCACG------------CugUCCaCGCUUGUgCgGCGg -5'
15754 5' -57 NC_004065.1 + 25463 0.71 0.743938
Target:  5'- -cUGCGA--GGUGUGGacguACGCGCCGCUc -3'
miRNA:   3'- ccACGCUguCCACGCU----UGUGCGGCGG- -5'
15754 5' -57 NC_004065.1 + 27831 0.66 0.943237
Target:  5'- uGUGCcuGCGGGUGCu--CG-GCCGCCu -3'
miRNA:   3'- cCACGc-UGUCCACGcuuGUgCGGCGG- -5'
15754 5' -57 NC_004065.1 + 27852 0.73 0.608901
Target:  5'- uGGUGCcGCGGG-GCGAACugGUCGa- -3'
miRNA:   3'- -CCACGcUGUCCaCGCUUGugCGGCgg -5'
15754 5' -57 NC_004065.1 + 28996 0.69 0.846575
Target:  5'- --gGCGGCGGuG-GCGAggcgccgcgcGCACGCgGCCu -3'
miRNA:   3'- ccaCGCUGUC-CaCGCU----------UGUGCGgCGG- -5'
15754 5' -57 NC_004065.1 + 30704 0.7 0.81379
Target:  5'- --cGCGACgucgAGGUgGCGGACGCGUugaacgacguggaCGCCa -3'
miRNA:   3'- ccaCGCUG----UCCA-CGCUUGUGCG-------------GCGG- -5'
15754 5' -57 NC_004065.1 + 30874 0.66 0.938798
Target:  5'- --cGaCGGCGGGUuCGAGCGC-CCGCa -3'
miRNA:   3'- ccaC-GCUGUCCAcGCUUGUGcGGCGg -5'
15754 5' -57 NC_004065.1 + 31220 0.67 0.90759
Target:  5'- ----gGACAGG-GCGAACGCGCU-CCu -3'
miRNA:   3'- ccacgCUGUCCaCGCUUGUGCGGcGG- -5'
15754 5' -57 NC_004065.1 + 31495 0.69 0.854135
Target:  5'- uGGUGCGGCugAGGUacaucgccucguGCG-ACGUGCCGCg -3'
miRNA:   3'- -CCACGCUG--UCCA------------CGCuUGUGCGGCGg -5'
15754 5' -57 NC_004065.1 + 31693 0.66 0.934142
Target:  5'- aGGUGCGuC-GGUGCccGAGCGUGCCGa- -3'
miRNA:   3'- -CCACGCuGuCCACG--CUUGUGCGGCgg -5'
15754 5' -57 NC_004065.1 + 31743 0.7 0.78025
Target:  5'- cGGUGCuggaACGcGGUGuCGGACGCGuuGCa -3'
miRNA:   3'- -CCACGc---UGU-CCAC-GCUUGUGCggCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.