Results 1 - 20 of 222 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15754 | 5' | -57 | NC_004065.1 | + | 19500 | 0.71 | 0.725214 |
Target: 5'- --cGCGAUGGGgacgGCgGAAC-CGCUGCCg -3' miRNA: 3'- ccaCGCUGUCCa---CG-CUUGuGCGGCGG- -5' |
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15754 | 5' | -57 | NC_004065.1 | + | 136911 | 0.74 | 0.589411 |
Target: 5'- uGGaa-GAC-GGUGCGAACACGCacaGCCu -3' miRNA: 3'- -CCacgCUGuCCACGCUUGUGCGg--CGG- -5' |
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15754 | 5' | -57 | NC_004065.1 | + | 89314 | 0.74 | 0.599145 |
Target: 5'- --cGCGGCAGcGaguucUGCaGGACGCGCUGCCa -3' miRNA: 3'- ccaCGCUGUC-C-----ACG-CUUGUGCGGCGG- -5' |
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15754 | 5' | -57 | NC_004065.1 | + | 196834 | 0.73 | 0.628455 |
Target: 5'- -cUGCGGCAGGUGCGGGCgacgguacaGCGUcuCGCa -3' miRNA: 3'- ccACGCUGUCCACGCUUG---------UGCG--GCGg -5' |
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15754 | 5' | -57 | NC_004065.1 | + | 229363 | 0.73 | 0.628455 |
Target: 5'- --aGCGAgCGGGUGCucgcuACGCGCgGCCg -3' miRNA: 3'- ccaCGCU-GUCCACGcu---UGUGCGgCGG- -5' |
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15754 | 5' | -57 | NC_004065.1 | + | 175458 | 0.72 | 0.667537 |
Target: 5'- --gGCGAagcaCAGGaggcUGCGAGCACGCC-CCa -3' miRNA: 3'- ccaCGCU----GUCC----ACGCUUGUGCGGcGG- -5' |
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15754 | 5' | -57 | NC_004065.1 | + | 55954 | 0.72 | 0.68695 |
Target: 5'- uGGUGa-GCAGGUGC-AGCACGgggacgacaCCGCCa -3' miRNA: 3'- -CCACgcUGUCCACGcUUGUGC---------GGCGG- -5' |
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15754 | 5' | -57 | NC_004065.1 | + | 91180 | 0.72 | 0.696597 |
Target: 5'- --gGCGACGGccGCGGAaGCGCCGUCg -3' miRNA: 3'- ccaCGCUGUCcaCGCUUgUGCGGCGG- -5' |
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15754 | 5' | -57 | NC_004065.1 | + | 97570 | 0.71 | 0.719536 |
Target: 5'- gGGUGCuugaaaGACAGGgGCGGacgGCGCaacacgucgaaggagGCCGCCg -3' miRNA: 3'- -CCACG------CUGUCCaCGCU---UGUG---------------CGGCGG- -5' |
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15754 | 5' | -57 | NC_004065.1 | + | 48113 | 0.74 | 0.589411 |
Target: 5'- cGGUgGCGGCGgcGGUGgGAccucgcGCACGuuGCCg -3' miRNA: 3'- -CCA-CGCUGU--CCACgCU------UGUGCggCGG- -5' |
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15754 | 5' | -57 | NC_004065.1 | + | 125100 | 0.74 | 0.579705 |
Target: 5'- aGGuUGCGGUA-GUGCGugUACGCCGCCg -3' miRNA: 3'- -CC-ACGCUGUcCACGCuuGUGCGGCGG- -5' |
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15754 | 5' | -57 | NC_004065.1 | + | 58202 | 0.74 | 0.570033 |
Target: 5'- --gGCGACGGGcaUGCGGucaaagccCACGUCGCCg -3' miRNA: 3'- ccaCGCUGUCC--ACGCUu-------GUGCGGCGG- -5' |
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15754 | 5' | -57 | NC_004065.1 | + | 99401 | 0.78 | 0.390945 |
Target: 5'- --aGCGACAGGUGCGcucgcagcaggGGCccgagcggcagACGCCGCCu -3' miRNA: 3'- ccaCGCUGUCCACGC-----------UUG-----------UGCGGCGG- -5' |
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15754 | 5' | -57 | NC_004065.1 | + | 122669 | 0.77 | 0.423919 |
Target: 5'- cGG-GCGGCAGGgugGUGAGCACGUCuCCc -3' miRNA: 3'- -CCaCGCUGUCCa--CGCUUGUGCGGcGG- -5' |
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15754 | 5' | -57 | NC_004065.1 | + | 45190 | 0.76 | 0.449714 |
Target: 5'- ---cCGACAGGgGC-AACACGCCGCCg -3' miRNA: 3'- ccacGCUGUCCaCGcUUGUGCGGCGG- -5' |
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15754 | 5' | -57 | NC_004065.1 | + | 123881 | 0.76 | 0.458502 |
Target: 5'- --cGCGccGCAGGUGCGccguGCACGUCGUCg -3' miRNA: 3'- ccaCGC--UGUCCACGCu---UGUGCGGCGG- -5' |
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15754 | 5' | -57 | NC_004065.1 | + | 112914 | 0.76 | 0.476349 |
Target: 5'- aGGUGCGACaccAGG-GCGcGGCACGCuCGCg -3' miRNA: 3'- -CCACGCUG---UCCaCGC-UUGUGCG-GCGg -5' |
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15754 | 5' | -57 | NC_004065.1 | + | 99575 | 0.75 | 0.541281 |
Target: 5'- uGGUGCGuCAGGUucuGgGGGCACaGCUGCUg -3' miRNA: 3'- -CCACGCuGUCCA---CgCUUGUG-CGGCGG- -5' |
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15754 | 5' | -57 | NC_004065.1 | + | 128413 | 0.74 | 0.560402 |
Target: 5'- --aGCGGCAGcG-GCGGcgGCGCCGCCa -3' miRNA: 3'- ccaCGCUGUC-CaCGCUugUGCGGCGG- -5' |
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15754 | 5' | -57 | NC_004065.1 | + | 90356 | 0.74 | 0.569068 |
Target: 5'- cGUGUGACAGcaGCGGccgccgcACGCGCCGCa -3' miRNA: 3'- cCACGCUGUCcaCGCU-------UGUGCGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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