miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15756 3' -56.7 NC_004065.1 + 127922 0.66 0.94992
Target:  5'- -cGCACCUCGGUCcggccaucgccgcccGCGUCGGCgUGcACu -3'
miRNA:   3'- caUGUGGGGCUAG---------------UGCGGCUGgAC-UG- -5'
15756 3' -56.7 NC_004065.1 + 229399 0.66 0.948288
Target:  5'- --uCACCCacAUC-CGCCG-CCUGACg -3'
miRNA:   3'- cauGUGGGgcUAGuGCGGCuGGACUG- -5'
15756 3' -56.7 NC_004065.1 + 50587 0.66 0.948288
Target:  5'- -aGCACCCUacuGUCuucggGCGCCGGCCUcuuccucggGACg -3'
miRNA:   3'- caUGUGGGGc--UAG-----UGCGGCUGGA---------CUG- -5'
15756 3' -56.7 NC_004065.1 + 119196 0.66 0.948288
Target:  5'- -cGCGCCCCGcaCugGU--GCCUGGCa -3'
miRNA:   3'- caUGUGGGGCuaGugCGgcUGGACUG- -5'
15756 3' -56.7 NC_004065.1 + 111376 0.66 0.947041
Target:  5'- -gGCGCuCCCGcucucaccagccagGUCAUGCgCGACCgGGCc -3'
miRNA:   3'- caUGUG-GGGC--------------UAGUGCG-GCUGGaCUG- -5'
15756 3' -56.7 NC_004065.1 + 555 0.66 0.944056
Target:  5'- -aGCGCCCCcuguUCGCGCaacgGGgCUGGCg -3'
miRNA:   3'- caUGUGGGGcu--AGUGCGg---CUgGACUG- -5'
15756 3' -56.7 NC_004065.1 + 180951 0.66 0.944056
Target:  5'- -cGCGCCgguaccuccuugCCGGUCA-GCUGGCCgGACg -3'
miRNA:   3'- caUGUGG------------GGCUAGUgCGGCUGGaCUG- -5'
15756 3' -56.7 NC_004065.1 + 17246 0.66 0.944056
Target:  5'- -aGCugCCuCGAUCuCGUCGACCUc-- -3'
miRNA:   3'- caUGugGG-GCUAGuGCGGCUGGAcug -5'
15756 3' -56.7 NC_004065.1 + 162640 0.66 0.944056
Target:  5'- --uCACCCCucucgugugCACGCCGACCgucacGAUg -3'
miRNA:   3'- cauGUGGGGcua------GUGCGGCUGGa----CUG- -5'
15756 3' -56.7 NC_004065.1 + 86136 0.66 0.943621
Target:  5'- -aAgGCCCUGAcuuuuuucuUCACGCCGGCgccguucUUGGCg -3'
miRNA:   3'- caUgUGGGGCU---------AGUGCGGCUG-------GACUG- -5'
15756 3' -56.7 NC_004065.1 + 212048 0.66 0.939604
Target:  5'- -gACACCCaagaGGUCGCGCggcagacggaCGACCgucacGGCg -3'
miRNA:   3'- caUGUGGGg---CUAGUGCG----------GCUGGa----CUG- -5'
15756 3' -56.7 NC_004065.1 + 229753 0.66 0.939604
Target:  5'- aGUACACuCCCGcgguaGUCGUGCCGgacaGCCgGACg -3'
miRNA:   3'- -CAUGUG-GGGC-----UAGUGCGGC----UGGaCUG- -5'
15756 3' -56.7 NC_004065.1 + 208703 0.66 0.939604
Target:  5'- uGUugACCgCCGcgCACGCCGA---GGCg -3'
miRNA:   3'- -CAugUGG-GGCuaGUGCGGCUggaCUG- -5'
15756 3' -56.7 NC_004065.1 + 117116 0.66 0.939604
Target:  5'- -cGCGCCCUGGUguCGC--ACCUGAUc -3'
miRNA:   3'- caUGUGGGGCUAguGCGgcUGGACUG- -5'
15756 3' -56.7 NC_004065.1 + 154000 0.66 0.939604
Target:  5'- ---aGCCCUcguGGUCACGuuGGCC-GACa -3'
miRNA:   3'- caugUGGGG---CUAGUGCggCUGGaCUG- -5'
15756 3' -56.7 NC_004065.1 + 31723 0.66 0.939604
Target:  5'- uGUGCgACCCCGAguUCAaGCgGugCUGGa -3'
miRNA:   3'- -CAUG-UGGGGCU--AGUgCGgCugGACUg -5'
15756 3' -56.7 NC_004065.1 + 162260 0.66 0.93493
Target:  5'- -gGCGCCCgCGccguucGUCACGCCG-UCgGACg -3'
miRNA:   3'- caUGUGGG-GC------UAGUGCGGCuGGaCUG- -5'
15756 3' -56.7 NC_004065.1 + 138825 0.66 0.93493
Target:  5'- -gGCGCCgaugCCGcgCACGCCGAC--GGCg -3'
miRNA:   3'- caUGUGG----GGCuaGUGCGGCUGgaCUG- -5'
15756 3' -56.7 NC_004065.1 + 142395 0.66 0.93493
Target:  5'- uUGCG-CCCGAgCugGCgcugacgauCGACCUGGCg -3'
miRNA:   3'- cAUGUgGGGCUaGugCG---------GCUGGACUG- -5'
15756 3' -56.7 NC_004065.1 + 116008 0.66 0.93493
Target:  5'- -gGCGCUCCGcgauguaaccGUCGuCGaCCGugCUGGCg -3'
miRNA:   3'- caUGUGGGGC----------UAGU-GC-GGCugGACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.