miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15756 3' -56.7 NC_004065.1 + 151970 1.1 0.003632
Target:  5'- uGUACACCCCGAUCACGCCGACCUGACg -3'
miRNA:   3'- -CAUGUGGGGCUAGUGCGGCUGGACUG- -5'
15756 3' -56.7 NC_004065.1 + 35149 0.79 0.339801
Target:  5'- uGUACACCgCGAUCAgauCGCCGugacuCCUGGCa -3'
miRNA:   3'- -CAUGUGGgGCUAGU---GCGGCu----GGACUG- -5'
15756 3' -56.7 NC_004065.1 + 99855 0.78 0.354789
Target:  5'- cUGCGCCCCGAUCGcCGCCGugCgagGGg -3'
miRNA:   3'- cAUGUGGGGCUAGU-GCGGCugGa--CUg -5'
15756 3' -56.7 NC_004065.1 + 118631 0.78 0.378132
Target:  5'- --cCGgCCCGGUCGCGCaUGACCUGGCu -3'
miRNA:   3'- cauGUgGGGCUAGUGCG-GCUGGACUG- -5'
15756 3' -56.7 NC_004065.1 + 98668 0.77 0.419263
Target:  5'- -aACACCCUGAUCACGUCGuCCcGAUc -3'
miRNA:   3'- caUGUGGGGCUAGUGCGGCuGGaCUG- -5'
15756 3' -56.7 NC_004065.1 + 108553 0.76 0.462993
Target:  5'- -cACGCCCgCGGaCGCGCCGACC-GACc -3'
miRNA:   3'- caUGUGGG-GCUaGUGCGGCUGGaCUG- -5'
15756 3' -56.7 NC_004065.1 + 91261 0.76 0.481145
Target:  5'- -gACGCCaUCGAcCGCGCCGACCUGcACc -3'
miRNA:   3'- caUGUGG-GGCUaGUGCGGCUGGAC-UG- -5'
15756 3' -56.7 NC_004065.1 + 105946 0.75 0.499636
Target:  5'- cUGCACCCgGGcuUCGCGCUGACCguggugcgGACg -3'
miRNA:   3'- cAUGUGGGgCU--AGUGCGGCUGGa-------CUG- -5'
15756 3' -56.7 NC_004065.1 + 34587 0.74 0.576324
Target:  5'- cGUGCGCUCCGcg-ACGCCGuuCCUGGCg -3'
miRNA:   3'- -CAUGUGGGGCuagUGCGGCu-GGACUG- -5'
15756 3' -56.7 NC_004065.1 + 66422 0.74 0.586134
Target:  5'- -aGCAUCCCGAccuUCA--CCGACCUGACu -3'
miRNA:   3'- caUGUGGGGCU---AGUgcGGCUGGACUG- -5'
15756 3' -56.7 NC_004065.1 + 65221 0.73 0.635526
Target:  5'- gGUugACCCCGAagagCACGgCGACCU-ACa -3'
miRNA:   3'- -CAugUGGGGCUa---GUGCgGCUGGAcUG- -5'
15756 3' -56.7 NC_004065.1 + 195768 0.72 0.665186
Target:  5'- -gGCGCCgUG-UCGCGCUGACCaUGGCg -3'
miRNA:   3'- caUGUGGgGCuAGUGCGGCUGG-ACUG- -5'
15756 3' -56.7 NC_004065.1 + 194746 0.72 0.672082
Target:  5'- -gACGCCCCGAacaccugaaacgucUCGCGCCGuCCcgaGACc -3'
miRNA:   3'- caUGUGGGGCU--------------AGUGCGGCuGGa--CUG- -5'
15756 3' -56.7 NC_004065.1 + 100128 0.72 0.675033
Target:  5'- -aGCACCCCGAUCAgCGCCuccaGCC-GAUg -3'
miRNA:   3'- caUGUGGGGCUAGU-GCGGc---UGGaCUG- -5'
15756 3' -56.7 NC_004065.1 + 31523 0.71 0.704344
Target:  5'- -gACGCCCUcacgcaGGUCGCGCUGuACCUGGa -3'
miRNA:   3'- caUGUGGGG------CUAGUGCGGC-UGGACUg -5'
15756 3' -56.7 NC_004065.1 + 196395 0.71 0.714011
Target:  5'- -cGCGCCCCGAaCGCGauGGCCUuGGCc -3'
miRNA:   3'- caUGUGGGGCUaGUGCggCUGGA-CUG- -5'
15756 3' -56.7 NC_004065.1 + 114822 0.71 0.723613
Target:  5'- gGUAUGCCCCG-UCGCGgCGGCCacGGCc -3'
miRNA:   3'- -CAUGUGGGGCuAGUGCgGCUGGa-CUG- -5'
15756 3' -56.7 NC_004065.1 + 126900 0.7 0.7612
Target:  5'- -aACGCCUCGGacgagCACGUCGAUCUGGa -3'
miRNA:   3'- caUGUGGGGCUa----GUGCGGCUGGACUg -5'
15756 3' -56.7 NC_004065.1 + 126300 0.7 0.7612
Target:  5'- uGUGCguGCUCaCGAUCACGCCcGCCaGGCg -3'
miRNA:   3'- -CAUG--UGGG-GCUAGUGCGGcUGGaCUG- -5'
15756 3' -56.7 NC_004065.1 + 69419 0.7 0.7612
Target:  5'- -gGCGCCa-GGUgCGCGCCGACCUG-Cu -3'
miRNA:   3'- caUGUGGggCUA-GUGCGGCUGGACuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.