miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15756 3' -56.7 NC_004065.1 + 18869 0.66 0.932018
Target:  5'- -gACAUCCCGG-CACGCCcgcucccccccgaacGGCCaGACc -3'
miRNA:   3'- caUGUGGGGCUaGUGCGG---------------CUGGaCUG- -5'
15756 3' -56.7 NC_004065.1 + 21006 0.66 0.930033
Target:  5'- -gAgACCUCGGUaUACGCCGGCCUu-- -3'
miRNA:   3'- caUgUGGGGCUA-GUGCGGCUGGAcug -5'
15756 3' -56.7 NC_004065.1 + 37696 0.66 0.930033
Target:  5'- cGUACACCaacuCGAUCgacGCGUCGugCccgGACa -3'
miRNA:   3'- -CAUGUGGg---GCUAG---UGCGGCugGa--CUG- -5'
15756 3' -56.7 NC_004065.1 + 111286 0.66 0.930033
Target:  5'- -gGCACCCCGA----GCCGACUgcgaGACc -3'
miRNA:   3'- caUGUGGGGCUagugCGGCUGGa---CUG- -5'
15756 3' -56.7 NC_004065.1 + 60651 0.66 0.929531
Target:  5'- ---uGCCCCGcgCcacgcacGCGUCGAgCUGACa -3'
miRNA:   3'- caugUGGGGCuaG-------UGCGGCUgGACUG- -5'
15756 3' -56.7 NC_004065.1 + 147414 0.66 0.929531
Target:  5'- -cACACCUacgaccaGGUCGucaaccuggugcuCGCCGACuCUGACg -3'
miRNA:   3'- caUGUGGGg------CUAGU-------------GCGGCUG-GACUG- -5'
15756 3' -56.7 NC_004065.1 + 32545 0.67 0.924912
Target:  5'- ---gGCCCCG-UCGCGCCGgcgguauccGCC-GACa -3'
miRNA:   3'- caugUGGGGCuAGUGCGGC---------UGGaCUG- -5'
15756 3' -56.7 NC_004065.1 + 24507 0.67 0.924912
Target:  5'- ---gGCCCUGA--GCGCCGGCCccaagaUGGCg -3'
miRNA:   3'- caugUGGGGCUagUGCGGCUGG------ACUG- -5'
15756 3' -56.7 NC_004065.1 + 139224 0.67 0.924912
Target:  5'- -aACGCCaaGAccCACGCCGAUCUG-Cu -3'
miRNA:   3'- caUGUGGggCUa-GUGCGGCUGGACuG- -5'
15756 3' -56.7 NC_004065.1 + 126612 0.67 0.924912
Target:  5'- -cGCGCUCC-AUCGCGUCGGCCg--- -3'
miRNA:   3'- caUGUGGGGcUAGUGCGGCUGGacug -5'
15756 3' -56.7 NC_004065.1 + 77209 0.67 0.922801
Target:  5'- -gGCGCCCCGcacggcgauggcCACGCUGAUCgUGGCc -3'
miRNA:   3'- caUGUGGGGCua----------GUGCGGCUGG-ACUG- -5'
15756 3' -56.7 NC_004065.1 + 125810 0.67 0.919568
Target:  5'- uGUGCGCCUCgGAUCcguCGCUGAUcacgaucuugCUGACg -3'
miRNA:   3'- -CAUGUGGGG-CUAGu--GCGGCUG----------GACUG- -5'
15756 3' -56.7 NC_004065.1 + 34950 0.67 0.919568
Target:  5'- cUGCGCCgCGcgCuCGcCCGACCUGcACu -3'
miRNA:   3'- cAUGUGGgGCuaGuGC-GGCUGGAC-UG- -5'
15756 3' -56.7 NC_004065.1 + 114966 0.67 0.919568
Target:  5'- -cGCGuCCUCGcgCGCGCCGuugcccucggcCCUGGCg -3'
miRNA:   3'- caUGU-GGGGCuaGUGCGGCu----------GGACUG- -5'
15756 3' -56.7 NC_004065.1 + 122260 0.67 0.914
Target:  5'- cUGCugCCCGcgCcgACaCCGACCUGGg -3'
miRNA:   3'- cAUGugGGGCuaG--UGcGGCUGGACUg -5'
15756 3' -56.7 NC_004065.1 + 99350 0.67 0.90821
Target:  5'- -gACGCaagggaagCCGAUCAUGCCGACguugggcaUGACg -3'
miRNA:   3'- caUGUGg-------GGCUAGUGCGGCUGg-------ACUG- -5'
15756 3' -56.7 NC_004065.1 + 110748 0.67 0.90821
Target:  5'- -gACGuCCCCuucUgGCGCCG-CCUGACa -3'
miRNA:   3'- caUGU-GGGGcu-AgUGCGGCuGGACUG- -5'
15756 3' -56.7 NC_004065.1 + 107431 0.67 0.90821
Target:  5'- cGUGCugCCCugGAUCGUGCCcauGGCgCUGGCg -3'
miRNA:   3'- -CAUGugGGG--CUAGUGCGG---CUG-GACUG- -5'
15756 3' -56.7 NC_004065.1 + 188125 0.67 0.90821
Target:  5'- uUGCACCCCuccGGggaGCuGCUGAUCUGACc -3'
miRNA:   3'- cAUGUGGGG---CUag-UG-CGGCUGGACUG- -5'
15756 3' -56.7 NC_004065.1 + 92038 0.67 0.90821
Target:  5'- cGUACACCCgGA----GCUGgGCCUGACg -3'
miRNA:   3'- -CAUGUGGGgCUagugCGGC-UGGACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.