miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15756 3' -56.7 NC_004065.1 + 360 0.7 0.809131
Target:  5'- -cGCGCCCCGA-CGCccaccugccacugccGCCGGCCgggaUGGCg -3'
miRNA:   3'- caUGUGGGGCUaGUG---------------CGGCUGG----ACUG- -5'
15756 3' -56.7 NC_004065.1 + 555 0.66 0.944056
Target:  5'- -aGCGCCCCcuguUCGCGCaacgGGgCUGGCg -3'
miRNA:   3'- caUGUGGGGcu--AGUGCGg---CUgGACUG- -5'
15756 3' -56.7 NC_004065.1 + 15477 0.69 0.811677
Target:  5'- aGUGCA-CCCGGUCuCGUaugcacggugcgaaCGACCUGGCu -3'
miRNA:   3'- -CAUGUgGGGCUAGuGCG--------------GCUGGACUG- -5'
15756 3' -56.7 NC_004065.1 + 17246 0.66 0.944056
Target:  5'- -aGCugCCuCGAUCuCGUCGACCUc-- -3'
miRNA:   3'- caUGugGG-GCUAGuGCGGCUGGAcug -5'
15756 3' -56.7 NC_004065.1 + 18869 0.66 0.932018
Target:  5'- -gACAUCCCGG-CACGCCcgcucccccccgaacGGCCaGACc -3'
miRNA:   3'- caUGUGGGGCUaGUGCGG---------------CUGGaCUG- -5'
15756 3' -56.7 NC_004065.1 + 21006 0.66 0.930033
Target:  5'- -gAgACCUCGGUaUACGCCGGCCUu-- -3'
miRNA:   3'- caUgUGGGGCUA-GUGCGGCUGGAcug -5'
15756 3' -56.7 NC_004065.1 + 24507 0.67 0.924912
Target:  5'- ---gGCCCUGA--GCGCCGGCCccaagaUGGCg -3'
miRNA:   3'- caugUGGGGCUagUGCGGCUGG------ACUG- -5'
15756 3' -56.7 NC_004065.1 + 27594 0.68 0.853455
Target:  5'- cGUACACCCUaGAcgCGCuaucugaGCCGGuCCUGACc -3'
miRNA:   3'- -CAUGUGGGG-CUa-GUG-------CGGCU-GGACUG- -5'
15756 3' -56.7 NC_004065.1 + 31523 0.71 0.704344
Target:  5'- -gACGCCCUcacgcaGGUCGCGCUGuACCUGGa -3'
miRNA:   3'- caUGUGGGG------CUAGUGCGGC-UGGACUg -5'
15756 3' -56.7 NC_004065.1 + 31723 0.66 0.939604
Target:  5'- uGUGCgACCCCGAguUCAaGCgGugCUGGa -3'
miRNA:   3'- -CAUG-UGGGGCU--AGUgCGgCugGACUg -5'
15756 3' -56.7 NC_004065.1 + 32545 0.67 0.924912
Target:  5'- ---gGCCCCG-UCGCGCCGgcgguauccGCC-GACa -3'
miRNA:   3'- caugUGGGGCuAGUGCGGC---------UGGaCUG- -5'
15756 3' -56.7 NC_004065.1 + 34587 0.74 0.576324
Target:  5'- cGUGCGCUCCGcg-ACGCCGuuCCUGGCg -3'
miRNA:   3'- -CAUGUGGGGCuagUGCGGCu-GGACUG- -5'
15756 3' -56.7 NC_004065.1 + 34950 0.67 0.919568
Target:  5'- cUGCGCCgCGcgCuCGcCCGACCUGcACu -3'
miRNA:   3'- cAUGUGGgGCuaGuGC-GGCUGGAC-UG- -5'
15756 3' -56.7 NC_004065.1 + 34991 0.7 0.788296
Target:  5'- cGUGCGCCCUGGUCAUggacgagcgcgGCCGcuucuuCCUGuACg -3'
miRNA:   3'- -CAUGUGGGGCUAGUG-----------CGGCu-----GGAC-UG- -5'
15756 3' -56.7 NC_004065.1 + 35149 0.79 0.339801
Target:  5'- uGUACACCgCGAUCAgauCGCCGugacuCCUGGCa -3'
miRNA:   3'- -CAUGUGGgGCUAGU---GCGGCu----GGACUG- -5'
15756 3' -56.7 NC_004065.1 + 37696 0.66 0.930033
Target:  5'- cGUACACCaacuCGAUCgacGCGUCGugCccgGACa -3'
miRNA:   3'- -CAUGUGGg---GCUAG---UGCGGCugGa--CUG- -5'
15756 3' -56.7 NC_004065.1 + 50587 0.66 0.948288
Target:  5'- -aGCACCCUacuGUCuucggGCGCCGGCCUcuuccucggGACg -3'
miRNA:   3'- caUGUGGGGc--UAG-----UGCGGCUGGA---------CUG- -5'
15756 3' -56.7 NC_004065.1 + 55621 0.67 0.895971
Target:  5'- -cAgACCCCGGaCACGCaCGcCUUGACc -3'
miRNA:   3'- caUgUGGGGCUaGUGCG-GCuGGACUG- -5'
15756 3' -56.7 NC_004065.1 + 59101 0.69 0.822547
Target:  5'- -gACACucgaCCCGAUacUAUGCCGcCCUGACc -3'
miRNA:   3'- caUGUG----GGGCUA--GUGCGGCuGGACUG- -5'
15756 3' -56.7 NC_004065.1 + 60651 0.66 0.929531
Target:  5'- ---uGCCCCGcgCcacgcacGCGUCGAgCUGACa -3'
miRNA:   3'- caugUGGGGCuaG-------UGCGGCUgGACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.