Results 1 - 20 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15756 | 3' | -56.7 | NC_004065.1 | + | 27594 | 0.68 | 0.853455 |
Target: 5'- cGUACACCCUaGAcgCGCuaucugaGCCGGuCCUGACc -3' miRNA: 3'- -CAUGUGGGG-CUa-GUG-------CGGCU-GGACUG- -5' |
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15756 | 3' | -56.7 | NC_004065.1 | + | 123757 | 0.7 | 0.797076 |
Target: 5'- -aGCACCUCGGUgcgccgCGCGCCGgucGCCUGuCg -3' miRNA: 3'- caUGUGGGGCUA------GUGCGGC---UGGACuG- -5' |
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15756 | 3' | -56.7 | NC_004065.1 | + | 74445 | 0.7 | 0.805716 |
Target: 5'- ---gGCCUCGAgCACGCCGuCCUcGGCg -3' miRNA: 3'- caugUGGGGCUaGUGCGGCuGGA-CUG- -5' |
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15756 | 3' | -56.7 | NC_004065.1 | + | 120351 | 0.69 | 0.814209 |
Target: 5'- --cCACCUCGGggUACGUCGgcGCCUGACg -3' miRNA: 3'- cauGUGGGGCUa-GUGCGGC--UGGACUG- -5' |
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15756 | 3' | -56.7 | NC_004065.1 | + | 113140 | 0.69 | 0.817563 |
Target: 5'- -cGCGCCCCagcgucagcaggCACGCCaGCCUGAUg -3' miRNA: 3'- caUGUGGGGcua---------GUGCGGcUGGACUG- -5' |
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15756 | 3' | -56.7 | NC_004065.1 | + | 193482 | 0.69 | 0.821721 |
Target: 5'- aGUAgACCCCGAUguCGgCGgucgaguaguuccACCUGGCg -3' miRNA: 3'- -CAUgUGGGGCUAguGCgGC-------------UGGACUG- -5' |
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15756 | 3' | -56.7 | NC_004065.1 | + | 198249 | 0.69 | 0.822547 |
Target: 5'- -aGCACCCCGAUCAa--CGACCa--- -3' miRNA: 3'- caUGUGGGGCUAGUgcgGCUGGacug -5' |
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15756 | 3' | -56.7 | NC_004065.1 | + | 144448 | 0.69 | 0.822547 |
Target: 5'- -cGCACgCCaCGAUCGCGaaggCGACCaUGGCg -3' miRNA: 3'- caUGUG-GG-GCUAGUGCg---GCUGG-ACUG- -5' |
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15756 | 3' | -56.7 | NC_004065.1 | + | 142220 | 0.69 | 0.838731 |
Target: 5'- -aGCGuCCCCGugugCGCGuuGcGCCUGGCg -3' miRNA: 3'- caUGU-GGGGCua--GUGCggC-UGGACUG- -5' |
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15756 | 3' | -56.7 | NC_004065.1 | + | 133467 | 0.7 | 0.788296 |
Target: 5'- --cCGCCUCGGUCACGUaggcgaaaGugCUGGCg -3' miRNA: 3'- cauGUGGGGCUAGUGCGg-------CugGACUG- -5' |
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15756 | 3' | -56.7 | NC_004065.1 | + | 126300 | 0.7 | 0.7612 |
Target: 5'- uGUGCguGCUCaCGAUCACGCCcGCCaGGCg -3' miRNA: 3'- -CAUG--UGGG-GCUAGUGCGGcUGGaCUG- -5' |
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15756 | 3' | -56.7 | NC_004065.1 | + | 69419 | 0.7 | 0.7612 |
Target: 5'- -gGCGCCa-GGUgCGCGCCGACCUG-Cu -3' miRNA: 3'- caUGUGGggCUA-GUGCGGCUGGACuG- -5' |
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15756 | 3' | -56.7 | NC_004065.1 | + | 99855 | 0.78 | 0.354789 |
Target: 5'- cUGCGCCCCGAUCGcCGCCGugCgagGGg -3' miRNA: 3'- cAUGUGGGGCUAGU-GCGGCugGa--CUg -5' |
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15756 | 3' | -56.7 | NC_004065.1 | + | 91261 | 0.76 | 0.481145 |
Target: 5'- -gACGCCaUCGAcCGCGCCGACCUGcACc -3' miRNA: 3'- caUGUGG-GGCUaGUGCGGCUGGAC-UG- -5' |
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15756 | 3' | -56.7 | NC_004065.1 | + | 34587 | 0.74 | 0.576324 |
Target: 5'- cGUGCGCUCCGcg-ACGCCGuuCCUGGCg -3' miRNA: 3'- -CAUGUGGGGCuagUGCGGCu-GGACUG- -5' |
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15756 | 3' | -56.7 | NC_004065.1 | + | 66422 | 0.74 | 0.586134 |
Target: 5'- -aGCAUCCCGAccuUCA--CCGACCUGACu -3' miRNA: 3'- caUGUGGGGCU---AGUgcGGCUGGACUG- -5' |
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15756 | 3' | -56.7 | NC_004065.1 | + | 65221 | 0.73 | 0.635526 |
Target: 5'- gGUugACCCCGAagagCACGgCGACCU-ACa -3' miRNA: 3'- -CAugUGGGGCUa---GUGCgGCUGGAcUG- -5' |
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15756 | 3' | -56.7 | NC_004065.1 | + | 194746 | 0.72 | 0.672082 |
Target: 5'- -gACGCCCCGAacaccugaaacgucUCGCGCCGuCCcgaGACc -3' miRNA: 3'- caUGUGGGGCU--------------AGUGCGGCuGGa--CUG- -5' |
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15756 | 3' | -56.7 | NC_004065.1 | + | 31523 | 0.71 | 0.704344 |
Target: 5'- -gACGCCCUcacgcaGGUCGCGCUGuACCUGGa -3' miRNA: 3'- caUGUGGGG------CUAGUGCGGC-UGGACUg -5' |
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15756 | 3' | -56.7 | NC_004065.1 | + | 196395 | 0.71 | 0.714011 |
Target: 5'- -cGCGCCCCGAaCGCGauGGCCUuGGCc -3' miRNA: 3'- caUGUGGGGCUaGUGCggCUGGA-CUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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