miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15756 5' -57.8 NC_004065.1 + 46659 0.66 0.896497
Target:  5'- ----cGGcgAGCGCGCUCuGCUCGAu -3'
miRNA:   3'- uccauCCagUCGCGCGAGuCGAGCUu -5'
15756 5' -57.8 NC_004065.1 + 177212 0.66 0.883269
Target:  5'- cGGUcacuuuugccgAGGgcgGGCGCGCUCuGCUCGc- -3'
miRNA:   3'- uCCA-----------UCCag-UCGCGCGAGuCGAGCuu -5'
15756 5' -57.8 NC_004065.1 + 184733 0.66 0.883269
Target:  5'- ----cGGUC-GC-CGCUCGGCUCGGAu -3'
miRNA:   3'- uccauCCAGuCGcGCGAGUCGAGCUU- -5'
15756 5' -57.8 NC_004065.1 + 153123 0.66 0.876333
Target:  5'- gGGGUuuuGGUCgGGUGCGCgugcagcaaCAGCUCGu- -3'
miRNA:   3'- -UCCAu--CCAG-UCGCGCGa--------GUCGAGCuu -5'
15756 5' -57.8 NC_004065.1 + 124988 0.66 0.872071
Target:  5'- gAGGcgcGGGUCgugcAGCGCGCUCacguacgccagcagcGGCUCGu- -3'
miRNA:   3'- -UCCa--UCCAG----UCGCGCGAG---------------UCGAGCuu -5'
15756 5' -57.8 NC_004065.1 + 49082 0.66 0.869188
Target:  5'- aAGG-AGGUacCGGCGCGCUCGGa--GAc -3'
miRNA:   3'- -UCCaUCCA--GUCGCGCGAGUCgagCUu -5'
15756 5' -57.8 NC_004065.1 + 138759 0.66 0.869188
Target:  5'- aAGGUgcAGGUCGGCGCGgUCgauGGCgUCa-- -3'
miRNA:   3'- -UCCA--UCCAGUCGCGCgAG---UCG-AGcuu -5'
15756 5' -57.8 NC_004065.1 + 65470 0.66 0.861838
Target:  5'- ----cGGUCGGCGcCGCcgcCGGCUCGAc -3'
miRNA:   3'- uccauCCAGUCGC-GCGa--GUCGAGCUu -5'
15756 5' -57.8 NC_004065.1 + 95351 0.66 0.861838
Target:  5'- cGGUAGGagAGCGCaucCUCAGCgaaaaCGAc -3'
miRNA:   3'- uCCAUCCagUCGCGc--GAGUCGa----GCUu -5'
15756 5' -57.8 NC_004065.1 + 141498 0.67 0.853524
Target:  5'- uGGUcaGGGUCcuggacgAGCGCGgaCAGCUCa-- -3'
miRNA:   3'- uCCA--UCCAG-------UCGCGCgaGUCGAGcuu -5'
15756 5' -57.8 NC_004065.1 + 194235 0.67 0.838621
Target:  5'- cGGGaUGGGUCAGCuGCcucuucgccucGCUCAcGUUCGAc -3'
miRNA:   3'- -UCC-AUCCAGUCG-CG-----------CGAGU-CGAGCUu -5'
15756 5' -57.8 NC_004065.1 + 121265 0.68 0.778498
Target:  5'- --cUAGGUcCAGCGUGCUCuuGCUCGu- -3'
miRNA:   3'- uccAUCCA-GUCGCGCGAGu-CGAGCuu -5'
15756 5' -57.8 NC_004065.1 + 136673 0.69 0.741202
Target:  5'- cGGGcGGGUCuggccggcGGCGgGC-CGGCUCGAGc -3'
miRNA:   3'- -UCCaUCCAG--------UCGCgCGaGUCGAGCUU- -5'
15756 5' -57.8 NC_004065.1 + 104330 0.7 0.67275
Target:  5'- gGGGgaugaucGGGUCAGgGCGCUCuGCcggCGAGa -3'
miRNA:   3'- -UCCa------UCCAGUCgCGCGAGuCGa--GCUU- -5'
15756 5' -57.8 NC_004065.1 + 229670 0.7 0.662777
Target:  5'- cAGGUGGGcgUCggGGCGCGCgUCcGCUCGGc -3'
miRNA:   3'- -UCCAUCC--AG--UCGCGCG-AGuCGAGCUu -5'
15756 5' -57.8 NC_004065.1 + 126715 0.72 0.582783
Target:  5'- cAGGUGGGUCAGacaggcgGCGCUgAuCUCGAAg -3'
miRNA:   3'- -UCCAUCCAGUCg------CGCGAgUcGAGCUU- -5'
15756 5' -57.8 NC_004065.1 + 116128 0.73 0.533657
Target:  5'- gAGGUAgcuGGUCGGCGUccuGCggCGGCUCGGGg -3'
miRNA:   3'- -UCCAU---CCAGUCGCG---CGa-GUCGAGCUU- -5'
15756 5' -57.8 NC_004065.1 + 78856 0.76 0.373223
Target:  5'- aAGGgcGGcCGGCGCGC-CAGCUCGc- -3'
miRNA:   3'- -UCCauCCaGUCGCGCGaGUCGAGCuu -5'
15756 5' -57.8 NC_004065.1 + 152004 1.05 0.004301
Target:  5'- cAGGUAGGUCAGCGCGCUCAGCUCGAAc -3'
miRNA:   3'- -UCCAUCCAGUCGCGCGAGUCGAGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.