miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15757 3' -57 NC_004065.1 + 31133 0.66 0.948186
Target:  5'- gCUgGACGG-GAAGgugauccccCUGGGGuuUCCGCa -3'
miRNA:   3'- aGAgCUGCCaCUUC---------GACCCC--AGGUGc -5'
15757 3' -57 NC_004065.1 + 41471 0.66 0.948186
Target:  5'- gCUCucCGGgcucGAGCUGGGGUUCAa- -3'
miRNA:   3'- aGAGcuGCCac--UUCGACCCCAGGUgc -5'
15757 3' -57 NC_004065.1 + 120489 0.66 0.945691
Target:  5'- --aCGACGGUGucGUgcccGGGGuagacggugaccugcUCCACGg -3'
miRNA:   3'- agaGCUGCCACuuCGa---CCCC---------------AGGUGC- -5'
15757 3' -57 NC_004065.1 + 86751 0.66 0.943553
Target:  5'- cCUCGGCccuUGAAGCUGccgcccccgccgcGGGUCCAUc -3'
miRNA:   3'- aGAGCUGcc-ACUUCGAC-------------CCCAGGUGc -5'
15757 3' -57 NC_004065.1 + 11971 0.66 0.939568
Target:  5'- --gCGAggucCGGUGAuGCUGGuGG-CCGCGa -3'
miRNA:   3'- agaGCU----GCCACUuCGACC-CCaGGUGC- -5'
15757 3' -57 NC_004065.1 + 64410 0.66 0.934932
Target:  5'- cCUaaaGACGGUcgaGAAGCUGGucgcGG-CCACGc -3'
miRNA:   3'- aGAg--CUGCCA---CUUCGACC----CCaGGUGC- -5'
15757 3' -57 NC_004065.1 + 93515 0.66 0.934932
Target:  5'- aCUCGcguucUGGUaGAugacGCUGGGGUCCAg- -3'
miRNA:   3'- aGAGCu----GCCA-CUu---CGACCCCAGGUgc -5'
15757 3' -57 NC_004065.1 + 110547 0.66 0.930077
Target:  5'- aCUCGGugaaGGUGGAcGCUucGGcGGUCCGCc -3'
miRNA:   3'- aGAGCUg---CCACUU-CGA--CC-CCAGGUGc -5'
15757 3' -57 NC_004065.1 + 178427 0.67 0.925002
Target:  5'- uUCUUGugGGc---GUUGGGGgCCACGu -3'
miRNA:   3'- -AGAGCugCCacuuCGACCCCaGGUGC- -5'
15757 3' -57 NC_004065.1 + 62369 0.67 0.919166
Target:  5'- --aCGGCGGUGGcggcgggggugguGGCggcgGGGGUggcggCCGCGg -3'
miRNA:   3'- agaGCUGCCACU-------------UCGa---CCCCA-----GGUGC- -5'
15757 3' -57 NC_004065.1 + 87110 0.67 0.90251
Target:  5'- aCUCGACGGcc-GGCgugUGGuGGUCCAgGa -3'
miRNA:   3'- aGAGCUGCCacuUCG---ACC-CCAGGUgC- -5'
15757 3' -57 NC_004065.1 + 191421 0.67 0.896346
Target:  5'- gCUCGGCcaGGUGAGGUgcagggUGGGGUUggucgagaaCACGa -3'
miRNA:   3'- aGAGCUG--CCACUUCG------ACCCCAG---------GUGC- -5'
15757 3' -57 NC_004065.1 + 136445 0.68 0.889969
Target:  5'- gUCgguaGGCGG-GAAGCUGGGGagCCGa- -3'
miRNA:   3'- -AGag--CUGCCaCUUCGACCCCa-GGUgc -5'
15757 3' -57 NC_004065.1 + 75355 0.68 0.888669
Target:  5'- cCUCGACGGUGcccgagaggagcAGCUGGaGGUgauacuugUCGCGg -3'
miRNA:   3'- aGAGCUGCCACu-----------UCGACC-CCA--------GGUGC- -5'
15757 3' -57 NC_004065.1 + 108080 0.68 0.883384
Target:  5'- aCUUGACGGUGuuuCUGGaGaUCCGCGg -3'
miRNA:   3'- aGAGCUGCCACuucGACC-CcAGGUGC- -5'
15757 3' -57 NC_004065.1 + 102618 0.68 0.883384
Target:  5'- -gUCGACGGUGAcggccugggagaGGC-GGGaGUCCuCGa -3'
miRNA:   3'- agAGCUGCCACU------------UCGaCCC-CAGGuGC- -5'
15757 3' -57 NC_004065.1 + 75568 0.68 0.875904
Target:  5'- gUCUCGGCGGccgUGAcguucgugucgccGGCgGGGGgaggCCGCu -3'
miRNA:   3'- -AGAGCUGCC---ACU-------------UCGaCCCCa---GGUGc -5'
15757 3' -57 NC_004065.1 + 45091 0.68 0.869603
Target:  5'- gUUCGAC-GUGcAGCUcGGGGUCCuccaGCGg -3'
miRNA:   3'- aGAGCUGcCACuUCGA-CCCCAGG----UGC- -5'
15757 3' -57 NC_004065.1 + 106689 0.68 0.862416
Target:  5'- aUCUcCGACGGUGcgccucGUUGuGGGUUCAUGa -3'
miRNA:   3'- -AGA-GCUGCCACuu----CGAC-CCCAGGUGC- -5'
15757 3' -57 NC_004065.1 + 132120 0.68 0.855037
Target:  5'- gUUCGA-GGUGAAcGCc-GGGUCCACGu -3'
miRNA:   3'- aGAGCUgCCACUU-CGacCCCAGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.