miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15757 3' -57 NC_004065.1 + 151670 1.1 0.003544
Target:  5'- uUCUCGACGGUGAAGCUGGGGUCCACGg -3'
miRNA:   3'- -AGAGCUGCCACUUCGACCCCAGGUGC- -5'
15757 3' -57 NC_004065.1 + 120403 0.74 0.541302
Target:  5'- cCUCGACGGUGGugggcaccgcGGCccgGGGGUCgagCGCGg -3'
miRNA:   3'- aGAGCUGCCACU----------UCGa--CCCCAG---GUGC- -5'
15757 3' -57 NC_004065.1 + 61669 0.74 0.550871
Target:  5'- --aUGGCGGUGuaGAGCgcgaGGGGUCCGCa -3'
miRNA:   3'- agaGCUGCCAC--UUCGa---CCCCAGGUGc -5'
15757 3' -57 NC_004065.1 + 35598 0.73 0.628785
Target:  5'- -gUCGGCGGUGucGgUGcGGGaUCCACGg -3'
miRNA:   3'- agAGCUGCCACuuCgAC-CCC-AGGUGC- -5'
15757 3' -57 NC_004065.1 + 102548 0.73 0.628785
Target:  5'- cCUCGuCGGUGgcGCcGGGGUcgggucCCGCGg -3'
miRNA:   3'- aGAGCuGCCACuuCGaCCCCA------GGUGC- -5'
15757 3' -57 NC_004065.1 + 117146 0.71 0.716357
Target:  5'- cUCagGACGGUGAacggcaccgacAGCgccgacGGGGUCCGCc -3'
miRNA:   3'- -AGagCUGCCACU-----------UCGa-----CCCCAGGUGc -5'
15757 3' -57 NC_004065.1 + 112678 0.71 0.74464
Target:  5'- uUCcUGACGGcgGAccccgacaAGCcGGGGUCCACGu -3'
miRNA:   3'- -AGaGCUGCCa-CU--------UCGaCCCCAGGUGC- -5'
15757 3' -57 NC_004065.1 + 192525 0.7 0.789856
Target:  5'- gCUUGGCGGa-GAGCcgccaGGGGUCCGCa -3'
miRNA:   3'- aGAGCUGCCacUUCGa----CCCCAGGUGc -5'
15757 3' -57 NC_004065.1 + 218982 0.7 0.807083
Target:  5'- -aUCGGCGGUGAuguGUaGGGGUgaaaCCAUGa -3'
miRNA:   3'- agAGCUGCCACUu--CGaCCCCA----GGUGC- -5'
15757 3' -57 NC_004065.1 + 212760 0.69 0.815482
Target:  5'- cCUcCGGCGGUGAAGaagaGGaGGUCgACGa -3'
miRNA:   3'- aGA-GCUGCCACUUCga--CC-CCAGgUGC- -5'
15757 3' -57 NC_004065.1 + 182423 0.69 0.815482
Target:  5'- cCUCGAgGGggcgcugGGcAGCcgGGGGUCCugGu -3'
miRNA:   3'- aGAGCUgCCa------CU-UCGa-CCCCAGGugC- -5'
15757 3' -57 NC_004065.1 + 55735 0.69 0.831812
Target:  5'- --cUGACGGUG-AGCa-GGGUCCACa -3'
miRNA:   3'- agaGCUGCCACuUCGacCCCAGGUGc -5'
15757 3' -57 NC_004065.1 + 133272 0.68 0.852787
Target:  5'- aUCUCGGUGGUGAguucaucaggagcgAGCUGuGGGUCUcguuGCa -3'
miRNA:   3'- -AGAGCUGCCACU--------------UCGAC-CCCAGG----UGc -5'
15757 3' -57 NC_004065.1 + 132120 0.68 0.855037
Target:  5'- gUUCGA-GGUGAAcGCc-GGGUCCACGu -3'
miRNA:   3'- aGAGCUgCCACUU-CGacCCCAGGUGC- -5'
15757 3' -57 NC_004065.1 + 106689 0.68 0.862416
Target:  5'- aUCUcCGACGGUGcgccucGUUGuGGGUUCAUGa -3'
miRNA:   3'- -AGA-GCUGCCACuu----CGAC-CCCAGGUGC- -5'
15757 3' -57 NC_004065.1 + 45091 0.68 0.869603
Target:  5'- gUUCGAC-GUGcAGCUcGGGGUCCuccaGCGg -3'
miRNA:   3'- aGAGCUGcCACuUCGA-CCCCAGG----UGC- -5'
15757 3' -57 NC_004065.1 + 75568 0.68 0.875904
Target:  5'- gUCUCGGCGGccgUGAcguucgugucgccGGCgGGGGgaggCCGCu -3'
miRNA:   3'- -AGAGCUGCC---ACU-------------UCGaCCCCa---GGUGc -5'
15757 3' -57 NC_004065.1 + 102618 0.68 0.883384
Target:  5'- -gUCGACGGUGAcggccugggagaGGC-GGGaGUCCuCGa -3'
miRNA:   3'- agAGCUGCCACU------------UCGaCCC-CAGGuGC- -5'
15757 3' -57 NC_004065.1 + 108080 0.68 0.883384
Target:  5'- aCUUGACGGUGuuuCUGGaGaUCCGCGg -3'
miRNA:   3'- aGAGCUGCCACuucGACC-CcAGGUGC- -5'
15757 3' -57 NC_004065.1 + 75355 0.68 0.888669
Target:  5'- cCUCGACGGUGcccgagaggagcAGCUGGaGGUgauacuugUCGCGg -3'
miRNA:   3'- aGAGCUGCCACu-----------UCGACC-CCA--------GGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.