miRNA display CGI


Results 21 - 33 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15757 3' -57 NC_004065.1 + 133272 0.68 0.852787
Target:  5'- aUCUCGGUGGUGAguucaucaggagcgAGCUGuGGGUCUcguuGCa -3'
miRNA:   3'- -AGAGCUGCCACU--------------UCGAC-CCCAGG----UGc -5'
15757 3' -57 NC_004065.1 + 55735 0.69 0.831812
Target:  5'- --cUGACGGUG-AGCa-GGGUCCACa -3'
miRNA:   3'- agaGCUGCCACuUCGacCCCAGGUGc -5'
15757 3' -57 NC_004065.1 + 212760 0.69 0.815482
Target:  5'- cCUcCGGCGGUGAAGaagaGGaGGUCgACGa -3'
miRNA:   3'- aGA-GCUGCCACUUCga--CC-CCAGgUGC- -5'
15757 3' -57 NC_004065.1 + 182423 0.69 0.815482
Target:  5'- cCUCGAgGGggcgcugGGcAGCcgGGGGUCCugGu -3'
miRNA:   3'- aGAGCUgCCa------CU-UCGa-CCCCAGGugC- -5'
15757 3' -57 NC_004065.1 + 218982 0.7 0.807083
Target:  5'- -aUCGGCGGUGAuguGUaGGGGUgaaaCCAUGa -3'
miRNA:   3'- agAGCUGCCACUu--CGaCCCCA----GGUGC- -5'
15757 3' -57 NC_004065.1 + 192525 0.7 0.789856
Target:  5'- gCUUGGCGGa-GAGCcgccaGGGGUCCGCa -3'
miRNA:   3'- aGAGCUGCCacUUCGa----CCCCAGGUGc -5'
15757 3' -57 NC_004065.1 + 112678 0.71 0.74464
Target:  5'- uUCcUGACGGcgGAccccgacaAGCcGGGGUCCACGu -3'
miRNA:   3'- -AGaGCUGCCa-CU--------UCGaCCCCAGGUGC- -5'
15757 3' -57 NC_004065.1 + 117146 0.71 0.716357
Target:  5'- cUCagGACGGUGAacggcaccgacAGCgccgacGGGGUCCGCc -3'
miRNA:   3'- -AGagCUGCCACU-----------UCGa-----CCCCAGGUGc -5'
15757 3' -57 NC_004065.1 + 102548 0.73 0.628785
Target:  5'- cCUCGuCGGUGgcGCcGGGGUcgggucCCGCGg -3'
miRNA:   3'- aGAGCuGCCACuuCGaCCCCA------GGUGC- -5'
15757 3' -57 NC_004065.1 + 35598 0.73 0.628785
Target:  5'- -gUCGGCGGUGucGgUGcGGGaUCCACGg -3'
miRNA:   3'- agAGCUGCCACuuCgAC-CCC-AGGUGC- -5'
15757 3' -57 NC_004065.1 + 61669 0.74 0.550871
Target:  5'- --aUGGCGGUGuaGAGCgcgaGGGGUCCGCa -3'
miRNA:   3'- agaGCUGCCAC--UUCGa---CCCCAGGUGc -5'
15757 3' -57 NC_004065.1 + 120403 0.74 0.541302
Target:  5'- cCUCGACGGUGGugggcaccgcGGCccgGGGGUCgagCGCGg -3'
miRNA:   3'- aGAGCUGCCACU----------UCGa--CCCCAG---GUGC- -5'
15757 3' -57 NC_004065.1 + 151670 1.1 0.003544
Target:  5'- uUCUCGACGGUGAAGCUGGGGUCCACGg -3'
miRNA:   3'- -AGAGCUGCCACUUCGACCCCAGGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.