miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15757 3' -57 NC_004065.1 + 117146 0.71 0.716357
Target:  5'- cUCagGACGGUGAacggcaccgacAGCgccgacGGGGUCCGCc -3'
miRNA:   3'- -AGagCUGCCACU-----------UCGa-----CCCCAGGUGc -5'
15757 3' -57 NC_004065.1 + 120403 0.74 0.541302
Target:  5'- cCUCGACGGUGGugggcaccgcGGCccgGGGGUCgagCGCGg -3'
miRNA:   3'- aGAGCUGCCACU----------UCGa--CCCCAG---GUGC- -5'
15757 3' -57 NC_004065.1 + 120489 0.66 0.945691
Target:  5'- --aCGACGGUGucGUgcccGGGGuagacggugaccugcUCCACGg -3'
miRNA:   3'- agaGCUGCCACuuCGa---CCCC---------------AGGUGC- -5'
15757 3' -57 NC_004065.1 + 132120 0.68 0.855037
Target:  5'- gUUCGA-GGUGAAcGCc-GGGUCCACGu -3'
miRNA:   3'- aGAGCUgCCACUU-CGacCCCAGGUGC- -5'
15757 3' -57 NC_004065.1 + 133272 0.68 0.852787
Target:  5'- aUCUCGGUGGUGAguucaucaggagcgAGCUGuGGGUCUcguuGCa -3'
miRNA:   3'- -AGAGCUGCCACU--------------UCGAC-CCCAGG----UGc -5'
15757 3' -57 NC_004065.1 + 136445 0.68 0.889969
Target:  5'- gUCgguaGGCGG-GAAGCUGGGGagCCGa- -3'
miRNA:   3'- -AGag--CUGCCaCUUCGACCCCa-GGUgc -5'
15757 3' -57 NC_004065.1 + 151670 1.1 0.003544
Target:  5'- uUCUCGACGGUGAAGCUGGGGUCCACGg -3'
miRNA:   3'- -AGAGCUGCCACUUCGACCCCAGGUGC- -5'
15757 3' -57 NC_004065.1 + 178427 0.67 0.925002
Target:  5'- uUCUUGugGGc---GUUGGGGgCCACGu -3'
miRNA:   3'- -AGAGCugCCacuuCGACCCCaGGUGC- -5'
15757 3' -57 NC_004065.1 + 182423 0.69 0.815482
Target:  5'- cCUCGAgGGggcgcugGGcAGCcgGGGGUCCugGu -3'
miRNA:   3'- aGAGCUgCCa------CU-UCGa-CCCCAGGugC- -5'
15757 3' -57 NC_004065.1 + 191421 0.67 0.896346
Target:  5'- gCUCGGCcaGGUGAGGUgcagggUGGGGUUggucgagaaCACGa -3'
miRNA:   3'- aGAGCUG--CCACUUCG------ACCCCAG---------GUGC- -5'
15757 3' -57 NC_004065.1 + 192525 0.7 0.789856
Target:  5'- gCUUGGCGGa-GAGCcgccaGGGGUCCGCa -3'
miRNA:   3'- aGAGCUGCCacUUCGa----CCCCAGGUGc -5'
15757 3' -57 NC_004065.1 + 212760 0.69 0.815482
Target:  5'- cCUcCGGCGGUGAAGaagaGGaGGUCgACGa -3'
miRNA:   3'- aGA-GCUGCCACUUCga--CC-CCAGgUGC- -5'
15757 3' -57 NC_004065.1 + 218982 0.7 0.807083
Target:  5'- -aUCGGCGGUGAuguGUaGGGGUgaaaCCAUGa -3'
miRNA:   3'- agAGCUGCCACUu--CGaCCCCA----GGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.