Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15757 | 3' | -57 | NC_004065.1 | + | 11971 | 0.66 | 0.939568 |
Target: 5'- --gCGAggucCGGUGAuGCUGGuGG-CCGCGa -3' miRNA: 3'- agaGCU----GCCACUuCGACC-CCaGGUGC- -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 120489 | 0.66 | 0.945691 |
Target: 5'- --aCGACGGUGucGUgcccGGGGuagacggugaccugcUCCACGg -3' miRNA: 3'- agaGCUGCCACuuCGa---CCCC---------------AGGUGC- -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 31133 | 0.66 | 0.948186 |
Target: 5'- gCUgGACGG-GAAGgugauccccCUGGGGuuUCCGCa -3' miRNA: 3'- aGAgCUGCCaCUUC---------GACCCC--AGGUGc -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 136445 | 0.68 | 0.889969 |
Target: 5'- gUCgguaGGCGG-GAAGCUGGGGagCCGa- -3' miRNA: 3'- -AGag--CUGCCaCUUCGACCCCa-GGUgc -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 102618 | 0.68 | 0.883384 |
Target: 5'- -gUCGACGGUGAcggccugggagaGGC-GGGaGUCCuCGa -3' miRNA: 3'- agAGCUGCCACU------------UCGaCCC-CAGGuGC- -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 212760 | 0.69 | 0.815482 |
Target: 5'- cCUcCGGCGGUGAAGaagaGGaGGUCgACGa -3' miRNA: 3'- aGA-GCUGCCACUUCga--CC-CCAGgUGC- -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 218982 | 0.7 | 0.807083 |
Target: 5'- -aUCGGCGGUGAuguGUaGGGGUgaaaCCAUGa -3' miRNA: 3'- agAGCUGCCACUu--CGaCCCCA----GGUGC- -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 192525 | 0.7 | 0.789856 |
Target: 5'- gCUUGGCGGa-GAGCcgccaGGGGUCCGCa -3' miRNA: 3'- aGAGCUGCCacUUCGa----CCCCAGGUGc -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 112678 | 0.71 | 0.74464 |
Target: 5'- uUCcUGACGGcgGAccccgacaAGCcGGGGUCCACGu -3' miRNA: 3'- -AGaGCUGCCa-CU--------UCGaCCCCAGGUGC- -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 102548 | 0.73 | 0.628785 |
Target: 5'- cCUCGuCGGUGgcGCcGGGGUcgggucCCGCGg -3' miRNA: 3'- aGAGCuGCCACuuCGaCCCCA------GGUGC- -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 120403 | 0.74 | 0.541302 |
Target: 5'- cCUCGACGGUGGugggcaccgcGGCccgGGGGUCgagCGCGg -3' miRNA: 3'- aGAGCUGCCACU----------UCGa--CCCCAG---GUGC- -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 151670 | 1.1 | 0.003544 |
Target: 5'- uUCUCGACGGUGAAGCUGGGGUCCACGg -3' miRNA: 3'- -AGAGCUGCCACUUCGACCCCAGGUGC- -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 41471 | 0.66 | 0.948186 |
Target: 5'- gCUCucCGGgcucGAGCUGGGGUUCAa- -3' miRNA: 3'- aGAGcuGCCac--UUCGACCCCAGGUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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