Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15757 | 3' | -57 | NC_004065.1 | + | 182423 | 0.69 | 0.815482 |
Target: 5'- cCUCGAgGGggcgcugGGcAGCcgGGGGUCCugGu -3' miRNA: 3'- aGAGCUgCCa------CU-UCGa-CCCCAGGugC- -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 55735 | 0.69 | 0.831812 |
Target: 5'- --cUGACGGUG-AGCa-GGGUCCACa -3' miRNA: 3'- agaGCUGCCACuUCGacCCCAGGUGc -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 133272 | 0.68 | 0.852787 |
Target: 5'- aUCUCGGUGGUGAguucaucaggagcgAGCUGuGGGUCUcguuGCa -3' miRNA: 3'- -AGAGCUGCCACU--------------UCGAC-CCCAGG----UGc -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 132120 | 0.68 | 0.855037 |
Target: 5'- gUUCGA-GGUGAAcGCc-GGGUCCACGu -3' miRNA: 3'- aGAGCUgCCACUU-CGacCCCAGGUGC- -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 106689 | 0.68 | 0.862416 |
Target: 5'- aUCUcCGACGGUGcgccucGUUGuGGGUUCAUGa -3' miRNA: 3'- -AGA-GCUGCCACuu----CGAC-CCCAGGUGC- -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 45091 | 0.68 | 0.869603 |
Target: 5'- gUUCGAC-GUGcAGCUcGGGGUCCuccaGCGg -3' miRNA: 3'- aGAGCUGcCACuUCGA-CCCCAGG----UGC- -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 75568 | 0.68 | 0.875904 |
Target: 5'- gUCUCGGCGGccgUGAcguucgugucgccGGCgGGGGgaggCCGCu -3' miRNA: 3'- -AGAGCUGCC---ACU-------------UCGaCCCCa---GGUGc -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 108080 | 0.68 | 0.883384 |
Target: 5'- aCUUGACGGUGuuuCUGGaGaUCCGCGg -3' miRNA: 3'- aGAGCUGCCACuucGACC-CcAGGUGC- -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 75355 | 0.68 | 0.888669 |
Target: 5'- cCUCGACGGUGcccgagaggagcAGCUGGaGGUgauacuugUCGCGg -3' miRNA: 3'- aGAGCUGCCACu-----------UCGACC-CCA--------GGUGC- -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 62369 | 0.67 | 0.919166 |
Target: 5'- --aCGGCGGUGGcggcgggggugguGGCggcgGGGGUggcggCCGCGg -3' miRNA: 3'- agaGCUGCCACU-------------UCGa---CCCCA-----GGUGC- -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 178427 | 0.67 | 0.925002 |
Target: 5'- uUCUUGugGGc---GUUGGGGgCCACGu -3' miRNA: 3'- -AGAGCugCCacuuCGACCCCaGGUGC- -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 64410 | 0.66 | 0.934932 |
Target: 5'- cCUaaaGACGGUcgaGAAGCUGGucgcGG-CCACGc -3' miRNA: 3'- aGAg--CUGCCA---CUUCGACC----CCaGGUGC- -5' |
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15757 | 3' | -57 | NC_004065.1 | + | 61669 | 0.74 | 0.550871 |
Target: 5'- --aUGGCGGUGuaGAGCgcgaGGGGUCCGCa -3' miRNA: 3'- agaGCUGCCAC--UUCGa---CCCCAGGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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