miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15759 3' -57.4 NC_004065.1 + 163887 0.66 0.945356
Target:  5'- uGGCGcCGGUCcgCGgcccagcgCGCCaGCGCCu -3'
miRNA:   3'- uCCGCaGCUAGa-GCaa------GCGG-CGUGGc -5'
15759 3' -57.4 NC_004065.1 + 104002 0.66 0.945356
Target:  5'- uGGGCGagCGG-CUCGUggCGCUggaGCACCu -3'
miRNA:   3'- -UCCGCa-GCUaGAGCAa-GCGG---CGUGGc -5'
15759 3' -57.4 NC_004065.1 + 89669 0.66 0.945356
Target:  5'- gGGGCGUCG-UCcCGaacgCGCCGCAg-- -3'
miRNA:   3'- -UCCGCAGCuAGaGCaa--GCGGCGUggc -5'
15759 3' -57.4 NC_004065.1 + 161846 0.66 0.945356
Target:  5'- cGGCGgggcCGAcagCUCcgUCGCgCGCGCCGc -3'
miRNA:   3'- uCCGCa---GCUa--GAGcaAGCG-GCGUGGC- -5'
15759 3' -57.4 NC_004065.1 + 126596 0.66 0.945356
Target:  5'- aAGGUGUCGAUCag----GCCGCGCUc -3'
miRNA:   3'- -UCCGCAGCUAGagcaagCGGCGUGGc -5'
15759 3' -57.4 NC_004065.1 + 113305 0.66 0.941033
Target:  5'- cGGGCGaCGccgCUCGcgCGCCGgACgCGg -3'
miRNA:   3'- -UCCGCaGCua-GAGCaaGCGGCgUG-GC- -5'
15759 3' -57.4 NC_004065.1 + 110126 0.66 0.941033
Target:  5'- gAGaGCGUCu-UCUCcg--GCCGCGCCGg -3'
miRNA:   3'- -UC-CGCAGcuAGAGcaagCGGCGUGGC- -5'
15759 3' -57.4 NC_004065.1 + 145753 0.66 0.941033
Target:  5'- gAGuGCGcCGAUCgCG-UCG-CGCGCCGg -3'
miRNA:   3'- -UC-CGCaGCUAGaGCaAGCgGCGUGGC- -5'
15759 3' -57.4 NC_004065.1 + 118742 0.66 0.941033
Target:  5'- gAGGUGUUGAagauggucuucUCUCGgUCaCgGCGCCGa -3'
miRNA:   3'- -UCCGCAGCU-----------AGAGCaAGcGgCGUGGC- -5'
15759 3' -57.4 NC_004065.1 + 38580 0.66 0.936494
Target:  5'- cGGCGUCGAggacucCUCGgUCGU--CACCGa -3'
miRNA:   3'- uCCGCAGCUa-----GAGCaAGCGgcGUGGC- -5'
15759 3' -57.4 NC_004065.1 + 202162 0.66 0.936494
Target:  5'- cGGcCGUCcAUCUCGaccagUUCGCCccgcgGCACCa -3'
miRNA:   3'- uCC-GCAGcUAGAGC-----AAGCGG-----CGUGGc -5'
15759 3' -57.4 NC_004065.1 + 85786 0.66 0.936494
Target:  5'- uGGCGuucUCGGUCaucCGUacggugagguucUUGCUGCGCCGa -3'
miRNA:   3'- uCCGC---AGCUAGa--GCA------------AGCGGCGUGGC- -5'
15759 3' -57.4 NC_004065.1 + 82096 0.66 0.936494
Target:  5'- cGGCGacgucgcagUCGAUCUCca--GCUGCGCCc -3'
miRNA:   3'- uCCGC---------AGCUAGAGcaagCGGCGUGGc -5'
15759 3' -57.4 NC_004065.1 + 120569 0.66 0.936494
Target:  5'- cAGGCucUCGAUCUgCGUgaggCGauacaCGCGCCGc -3'
miRNA:   3'- -UCCGc-AGCUAGA-GCAa---GCg----GCGUGGC- -5'
15759 3' -57.4 NC_004065.1 + 48507 0.66 0.936494
Target:  5'- uGGGCGUCGAUgC-CGgcgaugUUGCCG-ACCa -3'
miRNA:   3'- -UCCGCAGCUA-GaGCa-----AGCGGCgUGGc -5'
15759 3' -57.4 NC_004065.1 + 144003 0.66 0.936494
Target:  5'- uGGGCGcacauUCGAgagCUCGUccugucCGUCGCACUa -3'
miRNA:   3'- -UCCGC-----AGCUa--GAGCAa-----GCGGCGUGGc -5'
15759 3' -57.4 NC_004065.1 + 88567 0.66 0.935561
Target:  5'- gAGGauguCGUCGAUCUCGgggaugucgcccUCGUCGCgGCCc -3'
miRNA:   3'- -UCC----GCAGCUAGAGCa-----------AGCGGCG-UGGc -5'
15759 3' -57.4 NC_004065.1 + 31372 0.66 0.931739
Target:  5'- cGGCGUCGGaCgaca-CGCUGCACCu -3'
miRNA:   3'- uCCGCAGCUaGagcaaGCGGCGUGGc -5'
15759 3' -57.4 NC_004065.1 + 78585 0.66 0.931739
Target:  5'- uGGgGUCGAcgUCgcCGUcgaacgcgacgUCGUCGCGCCGc -3'
miRNA:   3'- uCCgCAGCU--AGa-GCA-----------AGCGGCGUGGC- -5'
15759 3' -57.4 NC_004065.1 + 161436 0.66 0.931739
Target:  5'- -cGUGUCGGcgcUCUgGaUCGCCGcCGCCGc -3'
miRNA:   3'- ucCGCAGCU---AGAgCaAGCGGC-GUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.