miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15759 5' -57.4 NC_004065.1 + 157878 0.66 0.932515
Target:  5'- -gUAGGGCGGUGGguucuccuGCGuguucaucgccGCGUCCa -3'
miRNA:   3'- caGUUCCGCCACCacu-----CGC-----------UGCAGGa -5'
15759 5' -57.4 NC_004065.1 + 62383 0.66 0.932515
Target:  5'- --gGGGGUGGUGGcggcggGGGUGGCGgCCg -3'
miRNA:   3'- cagUUCCGCCACCa-----CUCGCUGCaGGa -5'
15759 5' -57.4 NC_004065.1 + 104907 0.66 0.916853
Target:  5'- -aCGGcGCGGUGGUGccGGCGGCGUa-- -3'
miRNA:   3'- caGUUcCGCCACCAC--UCGCUGCAgga -5'
15759 5' -57.4 NC_004065.1 + 131291 0.66 0.916853
Target:  5'- ----cGGgGGuUGGUGAGCGACGgcgUCa -3'
miRNA:   3'- caguuCCgCC-ACCACUCGCUGCa--GGa -5'
15759 5' -57.4 NC_004065.1 + 185464 0.66 0.911188
Target:  5'- aUgAAGGUGGUGGUGGuGCGG-GUCg- -3'
miRNA:   3'- cAgUUCCGCCACCACU-CGCUgCAGga -5'
15759 5' -57.4 NC_004065.1 + 171954 0.66 0.911188
Target:  5'- -gCAAGGCGGgcGGUG-GCGGCGg--- -3'
miRNA:   3'- caGUUCCGCCa-CCACuCGCUGCagga -5'
15759 5' -57.4 NC_004065.1 + 67465 0.66 0.911188
Target:  5'- -cCGAGGCGGcGGUGuacguguGCGACGaCUUc -3'
miRNA:   3'- caGUUCCGCCaCCACu------CGCUGCaGGA- -5'
15759 5' -57.4 NC_004065.1 + 153503 0.66 0.911188
Target:  5'- aGUCAGGGCaucGGUcuGGaGAGCGugG-CCa -3'
miRNA:   3'- -CAGUUCCG---CCA--CCaCUCGCugCaGGa -5'
15759 5' -57.4 NC_004065.1 + 74138 0.66 0.909446
Target:  5'- cGUCGAGGCGGgugcccGGgccgagaaccccgcaGGCGGCGUUCg -3'
miRNA:   3'- -CAGUUCCGCCa-----CCac-------------UCGCUGCAGGa -5'
15759 5' -57.4 NC_004065.1 + 122669 0.67 0.899199
Target:  5'- ---cGGGCGGcagggUGGUGAGC-ACGUCUc -3'
miRNA:   3'- caguUCCGCC-----ACCACUCGcUGCAGGa -5'
15759 5' -57.4 NC_004065.1 + 30188 0.67 0.879604
Target:  5'- ----cGGCGGUGGUG-GCcguucugcagGAUGUCCg -3'
miRNA:   3'- caguuCCGCCACCACuCG----------CUGCAGGa -5'
15759 5' -57.4 NC_004065.1 + 229663 0.67 0.879604
Target:  5'- -gCAGuGGCaGGUGGgcgucgGGGCGcGCGUCCg -3'
miRNA:   3'- caGUU-CCG-CCACCa-----CUCGC-UGCAGGa -5'
15759 5' -57.4 NC_004065.1 + 165066 0.67 0.875459
Target:  5'- cGUCGaaaaaagaggacAGGCGGUGGgucaguagGcgccgucgucucugaGGCGGCGUCCc -3'
miRNA:   3'- -CAGU------------UCCGCCACCa-------C---------------UCGCUGCAGGa -5'
15759 5' -57.4 NC_004065.1 + 217185 0.67 0.872656
Target:  5'- cGUCGAGGUGGU--UGGGCGAuCGUUa- -3'
miRNA:   3'- -CAGUUCCGCCAccACUCGCU-GCAGga -5'
15759 5' -57.4 NC_004065.1 + 72717 0.67 0.865508
Target:  5'- cGUCAAGGUGGUGcGUucGCG-CGaCCUg -3'
miRNA:   3'- -CAGUUCCGCCAC-CAcuCGCuGCaGGA- -5'
15759 5' -57.4 NC_004065.1 + 115584 0.68 0.858163
Target:  5'- ----cGGCGGUGGUGguGGCGGCGg--- -3'
miRNA:   3'- caguuCCGCCACCAC--UCGCUGCagga -5'
15759 5' -57.4 NC_004065.1 + 68545 0.68 0.850629
Target:  5'- -gCGGcGGCGGaGGUGA-CGGCGUCCc -3'
miRNA:   3'- caGUU-CCGCCaCCACUcGCUGCAGGa -5'
15759 5' -57.4 NC_004065.1 + 111768 0.68 0.835011
Target:  5'- cGUCGAGGCGccGGcGAGCuccacGCGUCCg -3'
miRNA:   3'- -CAGUUCCGCcaCCaCUCGc----UGCAGGa -5'
15759 5' -57.4 NC_004065.1 + 168528 0.68 0.82202
Target:  5'- gGUCGAaacccguuuuuuagcGGCGGUGGUGgcAGCGGCGg--- -3'
miRNA:   3'- -CAGUU---------------CCGCCACCAC--UCGCUGCagga -5'
15759 5' -57.4 NC_004065.1 + 127484 0.7 0.728941
Target:  5'- gGUCGGGcGCGGcGG-GAGCGuuGUCCa -3'
miRNA:   3'- -CAGUUC-CGCCaCCaCUCGCugCAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.