miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1576 3' -58.5 NC_001347.2 + 102362 0.65 0.914048
Target:  5'- gACCGCCCUCGGaacccgccaugcaACGacuGCuCGAGUg -3'
miRNA:   3'- gUGGCGGGGGCCg------------UGCauuUG-GCUCG- -5'
1576 3' -58.5 NC_001347.2 + 112847 0.66 0.912929
Target:  5'- gGCCGCUa-CGGCGCcggGAuacaugacgggcacuGCCGAGCg -3'
miRNA:   3'- gUGGCGGggGCCGUGca-UU---------------UGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 4879 0.66 0.910664
Target:  5'- gCAUCGCCCCgaGGCGCugcucugAAGCCaAGUg -3'
miRNA:   3'- -GUGGCGGGGg-CCGUGca-----UUUGGcUCG- -5'
1576 3' -58.5 NC_001347.2 + 102303 0.66 0.910664
Target:  5'- gCugUGCCaCCCGGUGCu---GCaCGAGCc -3'
miRNA:   3'- -GugGCGG-GGGCCGUGcauuUG-GCUCG- -5'
1576 3' -58.5 NC_001347.2 + 90860 0.66 0.910664
Target:  5'- cCACCGCCgCCGccaucauguuGCGCGgaGACUcGGCc -3'
miRNA:   3'- -GUGGCGGgGGC----------CGUGCauUUGGcUCG- -5'
1576 3' -58.5 NC_001347.2 + 190123 0.66 0.910093
Target:  5'- -gUCGCCCCagaagagCGGUACGgggccgcAACCGGGUu -3'
miRNA:   3'- guGGCGGGG-------GCCGUGCau-----UUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 135581 0.66 0.907204
Target:  5'- cCACCGuCCaCCCGGCccaccuaccgucguCGUcgGCCGAccGCc -3'
miRNA:   3'- -GUGGC-GG-GGGCCGu-------------GCAuuUGGCU--CG- -5'
1576 3' -58.5 NC_001347.2 + 38360 0.66 0.904855
Target:  5'- cCACgGCUCCCgcuaucgcgcacGGCGCGUccccGCCG-GCg -3'
miRNA:   3'- -GUGgCGGGGG------------CCGUGCAuu--UGGCuCG- -5'
1576 3' -58.5 NC_001347.2 + 82000 0.66 0.904855
Target:  5'- uCACUGCCa-CGGcCACG-AAACCGAcagGCg -3'
miRNA:   3'- -GUGGCGGggGCC-GUGCaUUUGGCU---CG- -5'
1576 3' -58.5 NC_001347.2 + 6103 0.66 0.904855
Target:  5'- gUACaCGCCgUgGGUGCGUAGACUGcAGUu -3'
miRNA:   3'- -GUG-GCGGgGgCCGUGCAUUUGGC-UCG- -5'
1576 3' -58.5 NC_001347.2 + 39103 0.66 0.90307
Target:  5'- gCGgCGUCaCCC-GCGCGUAGAauccguacggccguCCGAGCg -3'
miRNA:   3'- -GUgGCGG-GGGcCGUGCAUUU--------------GGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 136847 0.66 0.898834
Target:  5'- -uCCGCCCCuaCGGgGCGUc-GCCuAGCa -3'
miRNA:   3'- guGGCGGGG--GCCgUGCAuuUGGcUCG- -5'
1576 3' -58.5 NC_001347.2 + 177564 0.66 0.896986
Target:  5'- aCGCCGCCaacaUGGCguaauugACGgugagaacucggAGACCGAGCg -3'
miRNA:   3'- -GUGGCGGgg--GCCG-------UGCa-----------UUUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 65867 0.66 0.892603
Target:  5'- gGCUgGCCUUCGGCACGcuggcGGGCCGAccGCc -3'
miRNA:   3'- gUGG-CGGGGGCCGUGCa----UUUGGCU--CG- -5'
1576 3' -58.5 NC_001347.2 + 84937 0.66 0.892603
Target:  5'- gACgGCa--UGGCGCGUAAACUGAGg -3'
miRNA:   3'- gUGgCGgggGCCGUGCAUUUGGCUCg -5'
1576 3' -58.5 NC_001347.2 + 82796 0.66 0.891969
Target:  5'- uCACCGaCCgCCCGG-ACGUGcucaAACCgcgucguGAGCg -3'
miRNA:   3'- -GUGGC-GG-GGGCCgUGCAU----UUGG-------CUCG- -5'
1576 3' -58.5 NC_001347.2 + 38010 0.66 0.886167
Target:  5'- cCGCCGCgcggCCUCGGCGgCGggcGCCGAcucGCg -3'
miRNA:   3'- -GUGGCG----GGGGCCGU-GCauuUGGCU---CG- -5'
1576 3' -58.5 NC_001347.2 + 155760 0.66 0.886167
Target:  5'- aCGCCGCCUUccucaaguaCGuGCACGgcGACUGcGCg -3'
miRNA:   3'- -GUGGCGGGG---------GC-CGUGCauUUGGCuCG- -5'
1576 3' -58.5 NC_001347.2 + 38447 0.66 0.886167
Target:  5'- cCGCCGUCCCCGucGC-CGgccccGCCGcGCa -3'
miRNA:   3'- -GUGGCGGGGGC--CGuGCauu--UGGCuCG- -5'
1576 3' -58.5 NC_001347.2 + 1871 0.66 0.886167
Target:  5'- gGCCGUgCgUCGGCACcUGAACC-AGCg -3'
miRNA:   3'- gUGGCGgG-GGCCGUGcAUUUGGcUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.