miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1576 3' -58.5 NC_001347.2 + 41149 0.67 0.858437
Target:  5'- -cCCGUCCCCcGCGCGgaaauccGCCGcGGCg -3'
miRNA:   3'- guGGCGGGGGcCGUGCauu----UGGC-UCG- -5'
1576 3' -58.5 NC_001347.2 + 39801 0.67 0.861348
Target:  5'- aGCCGCCuCCCgGGCGCGcacccaucuaggUGGAcgcccgacauccauuCCGGGCc -3'
miRNA:   3'- gUGGCGG-GGG-CCGUGC------------AUUU---------------GGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 172540 0.67 0.860623
Target:  5'- -cCCGCUggCUCGGCGCGgcuguauuauuagacGCCGGGCg -3'
miRNA:   3'- guGGCGG--GGGCCGUGCauu------------UGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 82928 0.67 0.858437
Target:  5'- cCAUgGCCCCCucGCACGUGGAUaaGGUg -3'
miRNA:   3'- -GUGgCGGGGGc-CGUGCAUUUGgcUCG- -5'
1576 3' -58.5 NC_001347.2 + 34580 0.67 0.858437
Target:  5'- gCugCaGCCagaCCGGaGCGgugagcgGAGCCGAGCa -3'
miRNA:   3'- -GugG-CGGg--GGCCgUGCa------UUUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 181533 0.67 0.858437
Target:  5'- gACuCGCCCCUGGCcACGcaccuguGGCCgcagGAGCu -3'
miRNA:   3'- gUG-GCGGGGGCCG-UGCau-----UUGG----CUCG- -5'
1576 3' -58.5 NC_001347.2 + 73990 0.67 0.858437
Target:  5'- gACUGaCCCaCgCGGCAUGUAcGCCGuccGCg -3'
miRNA:   3'- gUGGC-GGG-G-GCCGUGCAUuUGGCu--CG- -5'
1576 3' -58.5 NC_001347.2 + 13701 0.67 0.865659
Target:  5'- gCACCGUCaUCGGCACGUGcucuuuuuugaAAuCCGAGa -3'
miRNA:   3'- -GUGGCGGgGGCCGUGCAU-----------UU-GGCUCg -5'
1576 3' -58.5 NC_001347.2 + 196411 0.67 0.872691
Target:  5'- aACCGacaCCUgGGCGCGUuucaccuGCCG-GCg -3'
miRNA:   3'- gUGGCg--GGGgCCGUGCAuu-----UGGCuCG- -5'
1576 3' -58.5 NC_001347.2 + 65764 0.67 0.879528
Target:  5'- -cCCGgCaCCCGaGCACGUAcACCgcugGAGCu -3'
miRNA:   3'- guGGCgG-GGGC-CGUGCAUuUGG----CUCG- -5'
1576 3' -58.5 NC_001347.2 + 66595 0.67 0.879528
Target:  5'- gGCCGUUgCCGGCaacuuGCGacAACCgGAGCa -3'
miRNA:   3'- gUGGCGGgGGCCG-----UGCauUUGG-CUCG- -5'
1576 3' -58.5 NC_001347.2 + 909 0.67 0.879528
Target:  5'- -cCCGCCCCuUGGuCGCGgccGCgGGGCc -3'
miRNA:   3'- guGGCGGGG-GCC-GUGCauuUGgCUCG- -5'
1576 3' -58.5 NC_001347.2 + 40239 0.67 0.879528
Target:  5'- cCACaCGCCcgcgacacaCCCGGCACGacacACCcGGCa -3'
miRNA:   3'- -GUG-GCGG---------GGGCCGUGCauu-UGGcUCG- -5'
1576 3' -58.5 NC_001347.2 + 2487 0.67 0.872691
Target:  5'- gCGCCGCgCUgugGGCGCGcGAGCCGcacgGGCa -3'
miRNA:   3'- -GUGGCGgGGg--CCGUGCaUUUGGC----UCG- -5'
1576 3' -58.5 NC_001347.2 + 178239 0.67 0.865659
Target:  5'- aCACUGCCCCCcGUugG---ACCagGAGCu -3'
miRNA:   3'- -GUGGCGGGGGcCGugCauuUGG--CUCG- -5'
1576 3' -58.5 NC_001347.2 + 197070 0.67 0.865659
Target:  5'- uCGgCGCUCUCGG-ACGccGAGCUGAGCa -3'
miRNA:   3'- -GUgGCGGGGGCCgUGCa-UUUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 85337 0.68 0.835686
Target:  5'- gCGCCGCCgCCaGCGcCGUcgcccgcggcuAGGCCGAGa -3'
miRNA:   3'- -GUGGCGGgGGcCGU-GCA-----------UUUGGCUCg -5'
1576 3' -58.5 NC_001347.2 + 139919 0.68 0.835686
Target:  5'- uCACCGCgaucugaUCCGcGCGCu--GACCGAGCu -3'
miRNA:   3'- -GUGGCGg------GGGC-CGUGcauUUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 16715 0.68 0.82776
Target:  5'- uCGCCGCCCCUGcaGCGUcuAGCCG-GUg -3'
miRNA:   3'- -GUGGCGGGGGCcgUGCAu-UUGGCuCG- -5'
1576 3' -58.5 NC_001347.2 + 113894 0.68 0.835686
Target:  5'- gGCUGUCCCUGGCccugcGCGUGcAACCaGuGCu -3'
miRNA:   3'- gUGGCGGGGGCCG-----UGCAU-UUGG-CuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.