Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1576 | 3' | -58.5 | NC_001347.2 | + | 39378 | 0.71 | 0.674454 |
Target: 5'- aCGCCGUggCCCGGCGuCGUcguAGCCGcAGCa -3' miRNA: 3'- -GUGGCGg-GGGCCGU-GCAu--UUGGC-UCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 141831 | 0.71 | 0.645377 |
Target: 5'- gGCCGCCaCUgUGGCGCGUGAAUCGuuGGUa -3' miRNA: 3'- gUGGCGG-GG-GCCGUGCAUUUGGC--UCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 91190 | 0.71 | 0.635656 |
Target: 5'- aGCgCGCCUCCuaccagaagcuGGaCGCGUuGACCGAGCu -3' miRNA: 3'- gUG-GCGGGGG-----------CC-GUGCAuUUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 111462 | 0.71 | 0.635656 |
Target: 5'- gACUGUCCCCGGCACugauccuGACCGGa- -3' miRNA: 3'- gUGGCGGGGGCCGUGcau----UUGGCUcg -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 88136 | 0.71 | 0.655088 |
Target: 5'- aCACCGCCCacacgacgUCGGCACagcggGGugCGGGCc -3' miRNA: 3'- -GUGGCGGG--------GGCCGUGca---UUugGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 81640 | 0.7 | 0.71275 |
Target: 5'- gCGCCGCCgCCGGCcuCGgu-ACCGAa- -3' miRNA: 3'- -GUGGCGGgGGCCGu-GCauuUGGCUcg -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 151338 | 0.7 | 0.731557 |
Target: 5'- aCGCCGCaggCUCUgguGGCGCGUGGGCCcAGCc -3' miRNA: 3'- -GUGGCG---GGGG---CCGUGCAUUUGGcUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 208850 | 0.7 | 0.731557 |
Target: 5'- cCAgCGCCCgCCGGCgAUGUAAcaGCUG-GCg -3' miRNA: 3'- -GUgGCGGG-GGCCG-UGCAUU--UGGCuCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 199510 | 0.7 | 0.731557 |
Target: 5'- uCAUCGCCCUCGGCAgCGgacggcucACCuGGCg -3' miRNA: 3'- -GUGGCGGGGGCCGU-GCauu-----UGGcUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 36679 | 0.7 | 0.731557 |
Target: 5'- gACCgGgCUCCGGCGgGUGGcCUGAGCa -3' miRNA: 3'- gUGG-CgGGGGCCGUgCAUUuGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 94317 | 0.7 | 0.71275 |
Target: 5'- uCGCCGCCCacggcguccUCGGCGuCGUcggAGGCCGGuGCg -3' miRNA: 3'- -GUGGCGGG---------GGCCGU-GCA---UUUGGCU-CG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 185182 | 0.7 | 0.731557 |
Target: 5'- -cUUGCCUUCGGCGCGU--ACCGuGCc -3' miRNA: 3'- guGGCGGGGGCCGUGCAuuUGGCuCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 135934 | 0.7 | 0.684094 |
Target: 5'- aACCGggaCCCCGGUGCGggGgucccagcccgGCCGGGCc -3' miRNA: 3'- gUGGCg--GGGGCCGUGCauU-----------UGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 200112 | 0.7 | 0.703249 |
Target: 5'- gGCCGgCUCCGGCGgGcAAACCGAa- -3' miRNA: 3'- gUGGCgGGGGCCGUgCaUUUGGCUcg -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 107417 | 0.7 | 0.731557 |
Target: 5'- gUACCGCCacgcuCCGGCGCGgcGGaCGAGg -3' miRNA: 3'- -GUGGCGGg----GGCCGUGCauUUgGCUCg -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 192175 | 0.69 | 0.768175 |
Target: 5'- cCGCCGUCUCCGGaugaGCGgccgcGGCgCGGGCu -3' miRNA: 3'- -GUGGCGGGGGCCg---UGCau---UUG-GCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 156630 | 0.69 | 0.750053 |
Target: 5'- uCGCCGCUggCGGCGCcgcuGCCGGGCc -3' miRNA: 3'- -GUGGCGGggGCCGUGcauuUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 53370 | 0.69 | 0.750053 |
Target: 5'- --aUGCCCCaaaCGGCuuCG-AAACCGAGCg -3' miRNA: 3'- gugGCGGGG---GCCGu-GCaUUUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 135796 | 0.69 | 0.768175 |
Target: 5'- -cCCGUCCauuccgCGGCGgGUGGACCGGGa -3' miRNA: 3'- guGGCGGGg-----GCCGUgCAUUUGGCUCg -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 117273 | 0.69 | 0.740848 |
Target: 5'- cCACCGCUUaggGGCauguaguaGCGUAGAUCGGGCg -3' miRNA: 3'- -GUGGCGGGgg-CCG--------UGCAUUUGGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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