Results 41 - 60 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1576 | 3' | -58.5 | NC_001347.2 | + | 135796 | 0.69 | 0.768175 |
Target: 5'- -cCCGUCCauuccgCGGCGgGUGGACCGGGa -3' miRNA: 3'- guGGCGGGg-----GCCGUgCAUUUGGCUCg -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 78601 | 0.69 | 0.768175 |
Target: 5'- --aCGCCUCgCGGCGCGaggacuccaUGAGCCuGGGCg -3' miRNA: 3'- gugGCGGGG-GCCGUGC---------AUUUGG-CUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 117273 | 0.69 | 0.740848 |
Target: 5'- cCACCGCUUaggGGCauguaguaGCGUAGAUCGGGCg -3' miRNA: 3'- -GUGGCGGGgg-CCG--------UGCAUUUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 53370 | 0.69 | 0.750053 |
Target: 5'- --aUGCCCCaaaCGGCuuCG-AAACCGAGCg -3' miRNA: 3'- gugGCGGGG---GCCGu-GCaUUUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 21424 | 0.69 | 0.759165 |
Target: 5'- uGCCGCCaCCGGU-----GGCCGAGCu -3' miRNA: 3'- gUGGCGGgGGCCGugcauUUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 192970 | 0.69 | 0.768175 |
Target: 5'- gCGgCGCgCCCCGGCGuucaGUcgcGGCUGAGCg -3' miRNA: 3'- -GUgGCG-GGGGCCGUg---CAu--UUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 78327 | 0.69 | 0.740848 |
Target: 5'- aACCGUCUacuaCCcGCGCGUGGuCCGGGCg -3' miRNA: 3'- gUGGCGGG----GGcCGUGCAUUuGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 13900 | 0.68 | 0.819674 |
Target: 5'- gGCC-CUCCacaGGCGCGuUGGACgGGGCg -3' miRNA: 3'- gUGGcGGGGg--CCGUGC-AUUUGgCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 85337 | 0.68 | 0.835686 |
Target: 5'- gCGCCGCCgCCaGCGcCGUcgcccgcggcuAGGCCGAGa -3' miRNA: 3'- -GUGGCGGgGGcCGU-GCA-----------UUUGGCUCg -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 139919 | 0.68 | 0.835686 |
Target: 5'- uCACCGCgaucugaUCCGcGCGCu--GACCGAGCu -3' miRNA: 3'- -GUGGCGg------GGGC-CGUGcauUUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 16715 | 0.68 | 0.82776 |
Target: 5'- uCGCCGCCCCUGcaGCGUcuAGCCG-GUg -3' miRNA: 3'- -GUGGCGGGGGCcgUGCAu-UUGGCuCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 113894 | 0.68 | 0.835686 |
Target: 5'- gGCUGUCCCUGGCccugcGCGUGcAACCaGuGCu -3' miRNA: 3'- gUGGCGGGGGCCG-----UGCAU-UUGG-CuCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 38681 | 0.68 | 0.824544 |
Target: 5'- uGCCgGCCCaccgCCGGCGCagcucccguCCGAGCg -3' miRNA: 3'- gUGG-CGGG----GGCCGUGcauuu----GGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 2293 | 0.68 | 0.82776 |
Target: 5'- gUACUGCCCgCUggacgGGCACGUGuacccgcuggcGGCgGAGCu -3' miRNA: 3'- -GUGGCGGG-GG-----CCGUGCAU-----------UUGgCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 176194 | 0.68 | 0.82776 |
Target: 5'- gCACCGCCUCCGaacGCuCGUGAGCaacaGucGGCa -3' miRNA: 3'- -GUGGCGGGGGC---CGuGCAUUUGg---C--UCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 88541 | 0.68 | 0.794519 |
Target: 5'- aCGCCGCCgCCGGCcuCGUcgGCCa--- -3' miRNA: 3'- -GUGGCGGgGGCCGu-GCAuuUGGcucg -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 38498 | 0.68 | 0.794519 |
Target: 5'- gCACCGCgCCCaGCGCcagccAGCCGcAGCa -3' miRNA: 3'- -GUGGCGgGGGcCGUGcau--UUGGC-UCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 226787 | 0.68 | 0.803046 |
Target: 5'- gGCCcCaCCUCGGCAUGccgGcGCCGGGCg -3' miRNA: 3'- gUGGcG-GGGGCCGUGCa--UuUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 109826 | 0.68 | 0.803046 |
Target: 5'- uCGCCGCCaCCGGCaagACGccuugcCCGGGCc -3' miRNA: 3'- -GUGGCGGgGGCCG---UGCauuu--GGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 194502 | 0.68 | 0.819674 |
Target: 5'- cCGCCGCUgCaCGGCAUcau-GCUGGGCg -3' miRNA: 3'- -GUGGCGGgG-GCCGUGcauuUGGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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