miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1576 3' -58.5 NC_001347.2 + 188332 1.11 0.002024
Target:  5'- cCACCGCCCCCGGCACGUAAACCGAGCg -3'
miRNA:   3'- -GUGGCGGGGGCCGUGCAUUUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 78423 0.82 0.16569
Target:  5'- cCGCCGCCaCCCGGCccgGCGgcGcCCGAGCg -3'
miRNA:   3'- -GUGGCGG-GGGCCG---UGCauUuGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 135213 0.78 0.302434
Target:  5'- gCGCCGaCCCCGGCugGgcGGCCGAu- -3'
miRNA:   3'- -GUGGCgGGGGCCGugCauUUGGCUcg -5'
1576 3' -58.5 NC_001347.2 + 191221 0.77 0.32496
Target:  5'- gCACCGCCgcagcccggcuuuCCCGGCgucgugaaaggcacgGCGUAAugCGGGCa -3'
miRNA:   3'- -GUGGCGG-------------GGGCCG---------------UGCAUUugGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 199617 0.77 0.344301
Target:  5'- cCACCGCCgCCGGCGCcGUuc-UCGGGCa -3'
miRNA:   3'- -GUGGCGGgGGCCGUG-CAuuuGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 189843 0.77 0.344301
Target:  5'- gACCGCCCUCGGUcccCGUGAGCgGuAGCg -3'
miRNA:   3'- gUGGCGGGGGCCGu--GCAUUUGgC-UCG- -5'
1576 3' -58.5 NC_001347.2 + 197152 0.76 0.390176
Target:  5'- uCGCCGCCCCggggcccuCGGUGCGcu-ACCGGGCc -3'
miRNA:   3'- -GUGGCGGGG--------GCCGUGCauuUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 124877 0.74 0.483908
Target:  5'- uCACCGCCUCCcgaGGCACGUcgGGGCUGuGUc -3'
miRNA:   3'- -GUGGCGGGGG---CCGUGCA--UUUGGCuCG- -5'
1576 3' -58.5 NC_001347.2 + 222771 0.74 0.492971
Target:  5'- cCGCCGCCCauaccaUCGGCAUGUcgGCCGAcaaaucGCa -3'
miRNA:   3'- -GUGGCGGG------GGCCGUGCAuuUGGCU------CG- -5'
1576 3' -58.5 NC_001347.2 + 87828 0.74 0.502111
Target:  5'- aAUCGUCCUCuuugGGCACGUAGACC-AGCa -3'
miRNA:   3'- gUGGCGGGGG----CCGUGCAUUUGGcUCG- -5'
1576 3' -58.5 NC_001347.2 + 77731 0.74 0.5104
Target:  5'- gUACCGCUgCUGG-ACGUGAagaccaaGCCGAGCg -3'
miRNA:   3'- -GUGGCGGgGGCCgUGCAUU-------UGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 19183 0.74 0.511325
Target:  5'- gGCCGCCCCCGGagaauCGccAACCGuauaGGCg -3'
miRNA:   3'- gUGGCGGGGGCCgu---GCauUUGGC----UCG- -5'
1576 3' -58.5 NC_001347.2 + 225587 0.73 0.520607
Target:  5'- aGCCGCCCgUGGCcgggagaagACGgagGAGCCGAGa -3'
miRNA:   3'- gUGGCGGGgGCCG---------UGCa--UUUGGCUCg -5'
1576 3' -58.5 NC_001347.2 + 47776 0.73 0.529955
Target:  5'- cCGCCguGCCUCCGGUugGU-GGCCG-GCg -3'
miRNA:   3'- -GUGG--CGGGGGCCGugCAuUUGGCuCG- -5'
1576 3' -58.5 NC_001347.2 + 183808 0.73 0.529955
Target:  5'- cCACCaggGCCUCCaGCGCGUAuacggGGCUGGGCa -3'
miRNA:   3'- -GUGG---CGGGGGcCGUGCAU-----UUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 33416 0.72 0.596815
Target:  5'- uGCCGaCCCCCGGUgagcggucuucGCGUGAcCCGAa- -3'
miRNA:   3'- gUGGC-GGGGGCCG-----------UGCAUUuGGCUcg -5'
1576 3' -58.5 NC_001347.2 + 104339 0.72 0.616214
Target:  5'- gACCGCUggaUCCGGCACGc-GGCCG-GCg -3'
miRNA:   3'- gUGGCGG---GGGCCGUGCauUUGGCuCG- -5'
1576 3' -58.5 NC_001347.2 + 111462 0.71 0.635656
Target:  5'- gACUGUCCCCGGCACugauccuGACCGGa- -3'
miRNA:   3'- gUGGCGGGGGCCGUGcau----UUGGCUcg -5'
1576 3' -58.5 NC_001347.2 + 91190 0.71 0.635656
Target:  5'- aGCgCGCCUCCuaccagaagcuGGaCGCGUuGACCGAGCu -3'
miRNA:   3'- gUG-GCGGGGG-----------CC-GUGCAuUUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 141831 0.71 0.645377
Target:  5'- gGCCGCCaCUgUGGCGCGUGAAUCGuuGGUa -3'
miRNA:   3'- gUGGCGG-GG-GCCGUGCAUUUGGC--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.