Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1576 | 3' | -58.5 | NC_001347.2 | + | 188332 | 1.11 | 0.002024 |
Target: 5'- cCACCGCCCCCGGCACGUAAACCGAGCg -3' miRNA: 3'- -GUGGCGGGGGCCGUGCAUUUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 78423 | 0.82 | 0.16569 |
Target: 5'- cCGCCGCCaCCCGGCccgGCGgcGcCCGAGCg -3' miRNA: 3'- -GUGGCGG-GGGCCG---UGCauUuGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 135213 | 0.78 | 0.302434 |
Target: 5'- gCGCCGaCCCCGGCugGgcGGCCGAu- -3' miRNA: 3'- -GUGGCgGGGGCCGugCauUUGGCUcg -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 191221 | 0.77 | 0.32496 |
Target: 5'- gCACCGCCgcagcccggcuuuCCCGGCgucgugaaaggcacgGCGUAAugCGGGCa -3' miRNA: 3'- -GUGGCGG-------------GGGCCG---------------UGCAUUugGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 199617 | 0.77 | 0.344301 |
Target: 5'- cCACCGCCgCCGGCGCcGUuc-UCGGGCa -3' miRNA: 3'- -GUGGCGGgGGCCGUG-CAuuuGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 189843 | 0.77 | 0.344301 |
Target: 5'- gACCGCCCUCGGUcccCGUGAGCgGuAGCg -3' miRNA: 3'- gUGGCGGGGGCCGu--GCAUUUGgC-UCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 197152 | 0.76 | 0.390176 |
Target: 5'- uCGCCGCCCCggggcccuCGGUGCGcu-ACCGGGCc -3' miRNA: 3'- -GUGGCGGGG--------GCCGUGCauuUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 124877 | 0.74 | 0.483908 |
Target: 5'- uCACCGCCUCCcgaGGCACGUcgGGGCUGuGUc -3' miRNA: 3'- -GUGGCGGGGG---CCGUGCA--UUUGGCuCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 222771 | 0.74 | 0.492971 |
Target: 5'- cCGCCGCCCauaccaUCGGCAUGUcgGCCGAcaaaucGCa -3' miRNA: 3'- -GUGGCGGG------GGCCGUGCAuuUGGCU------CG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 87828 | 0.74 | 0.502111 |
Target: 5'- aAUCGUCCUCuuugGGCACGUAGACC-AGCa -3' miRNA: 3'- gUGGCGGGGG----CCGUGCAUUUGGcUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 77731 | 0.74 | 0.5104 |
Target: 5'- gUACCGCUgCUGG-ACGUGAagaccaaGCCGAGCg -3' miRNA: 3'- -GUGGCGGgGGCCgUGCAUU-------UGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 19183 | 0.74 | 0.511325 |
Target: 5'- gGCCGCCCCCGGagaauCGccAACCGuauaGGCg -3' miRNA: 3'- gUGGCGGGGGCCgu---GCauUUGGC----UCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 225587 | 0.73 | 0.520607 |
Target: 5'- aGCCGCCCgUGGCcgggagaagACGgagGAGCCGAGa -3' miRNA: 3'- gUGGCGGGgGCCG---------UGCa--UUUGGCUCg -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 47776 | 0.73 | 0.529955 |
Target: 5'- cCGCCguGCCUCCGGUugGU-GGCCG-GCg -3' miRNA: 3'- -GUGG--CGGGGGCCGugCAuUUGGCuCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 183808 | 0.73 | 0.529955 |
Target: 5'- cCACCaggGCCUCCaGCGCGUAuacggGGCUGGGCa -3' miRNA: 3'- -GUGG---CGGGGGcCGUGCAU-----UUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 33416 | 0.72 | 0.596815 |
Target: 5'- uGCCGaCCCCCGGUgagcggucuucGCGUGAcCCGAa- -3' miRNA: 3'- gUGGC-GGGGGCCG-----------UGCAUUuGGCUcg -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 104339 | 0.72 | 0.616214 |
Target: 5'- gACCGCUggaUCCGGCACGc-GGCCG-GCg -3' miRNA: 3'- gUGGCGG---GGGCCGUGCauUUGGCuCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 111462 | 0.71 | 0.635656 |
Target: 5'- gACUGUCCCCGGCACugauccuGACCGGa- -3' miRNA: 3'- gUGGCGGGGGCCGUGcau----UUGGCUcg -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 91190 | 0.71 | 0.635656 |
Target: 5'- aGCgCGCCUCCuaccagaagcuGGaCGCGUuGACCGAGCu -3' miRNA: 3'- gUG-GCGGGGG-----------CC-GUGCAuUUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 141831 | 0.71 | 0.645377 |
Target: 5'- gGCCGCCaCUgUGGCGCGUGAAUCGuuGGUa -3' miRNA: 3'- gUGGCGG-GG-GCCGUGCAUUUGGC--UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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