miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1576 3' -58.5 NC_001347.2 + 88136 0.71 0.655088
Target:  5'- aCACCGCCCacacgacgUCGGCACagcggGGugCGGGCc -3'
miRNA:   3'- -GUGGCGGG--------GGCCGUGca---UUugGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 136282 0.71 0.655088
Target:  5'- cCACCGCCgcggcccaugCCCGGCACG-GGGCuCGcGCu -3'
miRNA:   3'- -GUGGCGG----------GGGCCGUGCaUUUG-GCuCG- -5'
1576 3' -58.5 NC_001347.2 + 135496 0.71 0.655088
Target:  5'- -cCCGCUCCCGGaGCuccuGACCGGGCc -3'
miRNA:   3'- guGGCGGGGGCCgUGcau-UUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 183298 0.71 0.664783
Target:  5'- aGCgCGUCCUCcagGGUGCGUGAGCCcGGGCg -3'
miRNA:   3'- gUG-GCGGGGG---CCGUGCAUUUGG-CUCG- -5'
1576 3' -58.5 NC_001347.2 + 39378 0.71 0.674454
Target:  5'- aCGCCGUggCCCGGCGuCGUcguAGCCGcAGCa -3'
miRNA:   3'- -GUGGCGg-GGGCCGU-GCAu--UUGGC-UCG- -5'
1576 3' -58.5 NC_001347.2 + 135934 0.7 0.684094
Target:  5'- aACCGggaCCCCGGUGCGggGgucccagcccgGCCGGGCc -3'
miRNA:   3'- gUGGCg--GGGGCCGUGCauU-----------UGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 200112 0.7 0.703249
Target:  5'- gGCCGgCUCCGGCGgGcAAACCGAa- -3'
miRNA:   3'- gUGGCgGGGGCCGUgCaUUUGGCUcg -5'
1576 3' -58.5 NC_001347.2 + 81640 0.7 0.71275
Target:  5'- gCGCCGCCgCCGGCcuCGgu-ACCGAa- -3'
miRNA:   3'- -GUGGCGGgGGCCGu-GCauuUGGCUcg -5'
1576 3' -58.5 NC_001347.2 + 94317 0.7 0.71275
Target:  5'- uCGCCGCCCacggcguccUCGGCGuCGUcggAGGCCGGuGCg -3'
miRNA:   3'- -GUGGCGGG---------GGCCGU-GCA---UUUGGCU-CG- -5'
1576 3' -58.5 NC_001347.2 + 36679 0.7 0.731557
Target:  5'- gACCgGgCUCCGGCGgGUGGcCUGAGCa -3'
miRNA:   3'- gUGG-CgGGGGCCGUgCAUUuGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 208850 0.7 0.731557
Target:  5'- cCAgCGCCCgCCGGCgAUGUAAcaGCUG-GCg -3'
miRNA:   3'- -GUgGCGGG-GGCCG-UGCAUU--UGGCuCG- -5'
1576 3' -58.5 NC_001347.2 + 151338 0.7 0.731557
Target:  5'- aCGCCGCaggCUCUgguGGCGCGUGGGCCcAGCc -3'
miRNA:   3'- -GUGGCG---GGGG---CCGUGCAUUUGGcUCG- -5'
1576 3' -58.5 NC_001347.2 + 107417 0.7 0.731557
Target:  5'- gUACCGCCacgcuCCGGCGCGgcGGaCGAGg -3'
miRNA:   3'- -GUGGCGGg----GGCCGUGCauUUgGCUCg -5'
1576 3' -58.5 NC_001347.2 + 185182 0.7 0.731557
Target:  5'- -cUUGCCUUCGGCGCGU--ACCGuGCc -3'
miRNA:   3'- guGGCGGGGGCCGUGCAuuUGGCuCG- -5'
1576 3' -58.5 NC_001347.2 + 199510 0.7 0.731557
Target:  5'- uCAUCGCCCUCGGCAgCGgacggcucACCuGGCg -3'
miRNA:   3'- -GUGGCGGGGGCCGU-GCauu-----UGGcUCG- -5'
1576 3' -58.5 NC_001347.2 + 117273 0.69 0.740848
Target:  5'- cCACCGCUUaggGGCauguaguaGCGUAGAUCGGGCg -3'
miRNA:   3'- -GUGGCGGGgg-CCG--------UGCAUUUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 78327 0.69 0.740848
Target:  5'- aACCGUCUacuaCCcGCGCGUGGuCCGGGCg -3'
miRNA:   3'- gUGGCGGG----GGcCGUGCAUUuGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 156630 0.69 0.750053
Target:  5'- uCGCCGCUggCGGCGCcgcuGCCGGGCc -3'
miRNA:   3'- -GUGGCGGggGCCGUGcauuUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 53370 0.69 0.750053
Target:  5'- --aUGCCCCaaaCGGCuuCG-AAACCGAGCg -3'
miRNA:   3'- gugGCGGGG---GCCGu-GCaUUUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 21424 0.69 0.759165
Target:  5'- uGCCGCCaCCGGU-----GGCCGAGCu -3'
miRNA:   3'- gUGGCGGgGGCCGugcauUUGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.