miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1576 3' -58.5 NC_001347.2 + 192175 0.69 0.768175
Target:  5'- cCGCCGUCUCCGGaugaGCGgccgcGGCgCGGGCu -3'
miRNA:   3'- -GUGGCGGGGGCCg---UGCau---UUG-GCUCG- -5'
1576 3' -58.5 NC_001347.2 + 135796 0.69 0.768175
Target:  5'- -cCCGUCCauuccgCGGCGgGUGGACCGGGa -3'
miRNA:   3'- guGGCGGGg-----GCCGUgCAUUUGGCUCg -5'
1576 3' -58.5 NC_001347.2 + 78601 0.69 0.768175
Target:  5'- --aCGCCUCgCGGCGCGaggacuccaUGAGCCuGGGCg -3'
miRNA:   3'- gugGCGGGG-GCCGUGC---------AUUUGG-CUCG- -5'
1576 3' -58.5 NC_001347.2 + 192970 0.69 0.768175
Target:  5'- gCGgCGCgCCCCGGCGuucaGUcgcGGCUGAGCg -3'
miRNA:   3'- -GUgGCG-GGGGCCGUg---CAu--UUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 182848 0.69 0.776191
Target:  5'- aGCuCGCCCUCGcGCGcCGUGggaucggcuucgaGAUCGAGCu -3'
miRNA:   3'- gUG-GCGGGGGC-CGU-GCAU-------------UUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 116909 0.69 0.777076
Target:  5'- -cCCGCCgCCGGCuACGgcauccGAACCcAGCa -3'
miRNA:   3'- guGGCGGgGGCCG-UGCa-----UUUGGcUCG- -5'
1576 3' -58.5 NC_001347.2 + 155563 0.69 0.78586
Target:  5'- aCGCggaGCCCgCGGCugGUA---CGAGCg -3'
miRNA:   3'- -GUGg--CGGGgGCCGugCAUuugGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 38498 0.68 0.794519
Target:  5'- gCACCGCgCCCaGCGCcagccAGCCGcAGCa -3'
miRNA:   3'- -GUGGCGgGGGcCGUGcau--UUGGC-UCG- -5'
1576 3' -58.5 NC_001347.2 + 88541 0.68 0.794519
Target:  5'- aCGCCGCCgCCGGCcuCGUcgGCCa--- -3'
miRNA:   3'- -GUGGCGGgGGCCGu-GCAuuUGGcucg -5'
1576 3' -58.5 NC_001347.2 + 109826 0.68 0.803046
Target:  5'- uCGCCGCCaCCGGCaagACGccuugcCCGGGCc -3'
miRNA:   3'- -GUGGCGGgGGCCG---UGCauuu--GGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 226787 0.68 0.803046
Target:  5'- gGCCcCaCCUCGGCAUGccgGcGCCGGGCg -3'
miRNA:   3'- gUGGcG-GGGGCCGUGCa--UuUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 18944 0.68 0.808095
Target:  5'- cUACUGCCCaCgGGCGCGcgcaagacaaccaGAACUGGGCc -3'
miRNA:   3'- -GUGGCGGG-GgCCGUGCa------------UUUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 13900 0.68 0.819674
Target:  5'- gGCC-CUCCacaGGCGCGuUGGACgGGGCg -3'
miRNA:   3'- gUGGcGGGGg--CCGUGC-AUUUGgCUCG- -5'
1576 3' -58.5 NC_001347.2 + 194502 0.68 0.819674
Target:  5'- cCGCCGCUgCaCGGCAUcau-GCUGGGCg -3'
miRNA:   3'- -GUGGCGGgG-GCCGUGcauuUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 38681 0.68 0.824544
Target:  5'- uGCCgGCCCaccgCCGGCGCagcucccguCCGAGCg -3'
miRNA:   3'- gUGG-CGGG----GGCCGUGcauuu----GGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 2293 0.68 0.82776
Target:  5'- gUACUGCCCgCUggacgGGCACGUGuacccgcuggcGGCgGAGCu -3'
miRNA:   3'- -GUGGCGGG-GG-----CCGUGCAU-----------UUGgCUCG- -5'
1576 3' -58.5 NC_001347.2 + 176194 0.68 0.82776
Target:  5'- gCACCGCCUCCGaacGCuCGUGAGCaacaGucGGCa -3'
miRNA:   3'- -GUGGCGGGGGC---CGuGCAUUUGg---C--UCG- -5'
1576 3' -58.5 NC_001347.2 + 16715 0.68 0.82776
Target:  5'- uCGCCGCCCCUGcaGCGUcuAGCCG-GUg -3'
miRNA:   3'- -GUGGCGGGGGCcgUGCAu-UUGGCuCG- -5'
1576 3' -58.5 NC_001347.2 + 139919 0.68 0.835686
Target:  5'- uCACCGCgaucugaUCCGcGCGCu--GACCGAGCu -3'
miRNA:   3'- -GUGGCGg------GGGC-CGUGcauUUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 85337 0.68 0.835686
Target:  5'- gCGCCGCCgCCaGCGcCGUcgcccgcggcuAGGCCGAGa -3'
miRNA:   3'- -GUGGCGGgGGcCGU-GCA-----------UUUGGCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.