Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1576 | 3' | -58.5 | NC_001347.2 | + | 65764 | 0.67 | 0.879528 |
Target: 5'- -cCCGgCaCCCGaGCACGUAcACCgcugGAGCu -3' miRNA: 3'- guGGCgG-GGGC-CGUGCAUuUGG----CUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 66595 | 0.67 | 0.879528 |
Target: 5'- gGCCGUUgCCGGCaacuuGCGacAACCgGAGCa -3' miRNA: 3'- gUGGCGGgGGCCG-----UGCauUUGG-CUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 909 | 0.67 | 0.879528 |
Target: 5'- -cCCGCCCCuUGGuCGCGgccGCgGGGCc -3' miRNA: 3'- guGGCGGGG-GCC-GUGCauuUGgCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 40239 | 0.67 | 0.879528 |
Target: 5'- cCACaCGCCcgcgacacaCCCGGCACGacacACCcGGCa -3' miRNA: 3'- -GUG-GCGG---------GGGCCGUGCauu-UGGcUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 2487 | 0.67 | 0.872691 |
Target: 5'- gCGCCGCgCUgugGGCGCGcGAGCCGcacgGGCa -3' miRNA: 3'- -GUGGCGgGGg--CCGUGCaUUUGGC----UCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 196411 | 0.67 | 0.872691 |
Target: 5'- aACCGacaCCUgGGCGCGUuucaccuGCCG-GCg -3' miRNA: 3'- gUGGCg--GGGgCCGUGCAuu-----UGGCuCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 13701 | 0.67 | 0.865659 |
Target: 5'- gCACCGUCaUCGGCACGUGcucuuuuuugaAAuCCGAGa -3' miRNA: 3'- -GUGGCGGgGGCCGUGCAU-----------UU-GGCUCg -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 197070 | 0.67 | 0.865659 |
Target: 5'- uCGgCGCUCUCGG-ACGccGAGCUGAGCa -3' miRNA: 3'- -GUgGCGGGGGCCgUGCa-UUUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 178239 | 0.67 | 0.865659 |
Target: 5'- aCACUGCCCCCcGUugG---ACCagGAGCu -3' miRNA: 3'- -GUGGCGGGGGcCGugCauuUGG--CUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 39801 | 0.67 | 0.861348 |
Target: 5'- aGCCGCCuCCCgGGCGCGcacccaucuaggUGGAcgcccgacauccauuCCGGGCc -3' miRNA: 3'- gUGGCGG-GGG-CCGUGC------------AUUU---------------GGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 172540 | 0.67 | 0.860623 |
Target: 5'- -cCCGCUggCUCGGCGCGgcuguauuauuagacGCCGGGCg -3' miRNA: 3'- guGGCGG--GGGCCGUGCauu------------UGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 73990 | 0.67 | 0.858437 |
Target: 5'- gACUGaCCCaCgCGGCAUGUAcGCCGuccGCg -3' miRNA: 3'- gUGGC-GGG-G-GCCGUGCAUuUGGCu--CG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 181533 | 0.67 | 0.858437 |
Target: 5'- gACuCGCCCCUGGCcACGcaccuguGGCCgcagGAGCu -3' miRNA: 3'- gUG-GCGGGGGCCG-UGCau-----UUGG----CUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 34580 | 0.67 | 0.858437 |
Target: 5'- gCugCaGCCagaCCGGaGCGgugagcgGAGCCGAGCa -3' miRNA: 3'- -GugG-CGGg--GGCCgUGCa------UUUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 82928 | 0.67 | 0.858437 |
Target: 5'- cCAUgGCCCCCucGCACGUGGAUaaGGUg -3' miRNA: 3'- -GUGgCGGGGGc-CGUGCAUUUGgcUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 41149 | 0.67 | 0.858437 |
Target: 5'- -cCCGUCCCCcGCGCGgaaauccGCCGcGGCg -3' miRNA: 3'- guGGCGGGGGcCGUGCauu----UGGC-UCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 153786 | 0.68 | 0.835686 |
Target: 5'- aCGCCGCUCa-GGC-CGUGGuaguCCGAGUc -3' miRNA: 3'- -GUGGCGGGggCCGuGCAUUu---GGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 85337 | 0.68 | 0.835686 |
Target: 5'- gCGCCGCCgCCaGCGcCGUcgcccgcggcuAGGCCGAGa -3' miRNA: 3'- -GUGGCGGgGGcCGU-GCA-----------UUUGGCUCg -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 139919 | 0.68 | 0.835686 |
Target: 5'- uCACCGCgaucugaUCCGcGCGCu--GACCGAGCu -3' miRNA: 3'- -GUGGCGg------GGGC-CGUGcauUUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 113894 | 0.68 | 0.835686 |
Target: 5'- gGCUGUCCCUGGCccugcGCGUGcAACCaGuGCu -3' miRNA: 3'- gUGGCGGGGGCCG-----UGCAU-UUGG-CuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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