miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1576 3' -58.5 NC_001347.2 + 909 0.67 0.879528
Target:  5'- -cCCGCCCCuUGGuCGCGgccGCgGGGCc -3'
miRNA:   3'- guGGCGGGG-GCC-GUGCauuUGgCUCG- -5'
1576 3' -58.5 NC_001347.2 + 1871 0.66 0.886167
Target:  5'- gGCCGUgCgUCGGCACcUGAACC-AGCg -3'
miRNA:   3'- gUGGCGgG-GGCCGUGcAUUUGGcUCG- -5'
1576 3' -58.5 NC_001347.2 + 2293 0.68 0.82776
Target:  5'- gUACUGCCCgCUggacgGGCACGUGuacccgcuggcGGCgGAGCu -3'
miRNA:   3'- -GUGGCGGG-GG-----CCGUGCAU-----------UUGgCUCG- -5'
1576 3' -58.5 NC_001347.2 + 2487 0.67 0.872691
Target:  5'- gCGCCGCgCUgugGGCGCGcGAGCCGcacgGGCa -3'
miRNA:   3'- -GUGGCGgGGg--CCGUGCaUUUGGC----UCG- -5'
1576 3' -58.5 NC_001347.2 + 4879 0.66 0.910664
Target:  5'- gCAUCGCCCCgaGGCGCugcucugAAGCCaAGUg -3'
miRNA:   3'- -GUGGCGGGGg-CCGUGca-----UUUGGcUCG- -5'
1576 3' -58.5 NC_001347.2 + 6103 0.66 0.904855
Target:  5'- gUACaCGCCgUgGGUGCGUAGACUGcAGUu -3'
miRNA:   3'- -GUG-GCGGgGgCCGUGCAUUUGGC-UCG- -5'
1576 3' -58.5 NC_001347.2 + 13701 0.67 0.865659
Target:  5'- gCACCGUCaUCGGCACGUGcucuuuuuugaAAuCCGAGa -3'
miRNA:   3'- -GUGGCGGgGGCCGUGCAU-----------UU-GGCUCg -5'
1576 3' -58.5 NC_001347.2 + 13900 0.68 0.819674
Target:  5'- gGCC-CUCCacaGGCGCGuUGGACgGGGCg -3'
miRNA:   3'- gUGGcGGGGg--CCGUGC-AUUUGgCUCG- -5'
1576 3' -58.5 NC_001347.2 + 16715 0.68 0.82776
Target:  5'- uCGCCGCCCCUGcaGCGUcuAGCCG-GUg -3'
miRNA:   3'- -GUGGCGGGGGCcgUGCAu-UUGGCuCG- -5'
1576 3' -58.5 NC_001347.2 + 18944 0.68 0.808095
Target:  5'- cUACUGCCCaCgGGCGCGcgcaagacaaccaGAACUGGGCc -3'
miRNA:   3'- -GUGGCGGG-GgCCGUGCa------------UUUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 19183 0.74 0.511325
Target:  5'- gGCCGCCCCCGGagaauCGccAACCGuauaGGCg -3'
miRNA:   3'- gUGGCGGGGGCCgu---GCauUUGGC----UCG- -5'
1576 3' -58.5 NC_001347.2 + 21424 0.69 0.759165
Target:  5'- uGCCGCCaCCGGU-----GGCCGAGCu -3'
miRNA:   3'- gUGGCGGgGGCCGugcauUUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 33416 0.72 0.596815
Target:  5'- uGCCGaCCCCCGGUgagcggucuucGCGUGAcCCGAa- -3'
miRNA:   3'- gUGGC-GGGGGCCG-----------UGCAUUuGGCUcg -5'
1576 3' -58.5 NC_001347.2 + 34580 0.67 0.858437
Target:  5'- gCugCaGCCagaCCGGaGCGgugagcgGAGCCGAGCa -3'
miRNA:   3'- -GugG-CGGg--GGCCgUGCa------UUUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 36679 0.7 0.731557
Target:  5'- gACCgGgCUCCGGCGgGUGGcCUGAGCa -3'
miRNA:   3'- gUGG-CgGGGGCCGUgCAUUuGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 38010 0.66 0.886167
Target:  5'- cCGCCGCgcggCCUCGGCGgCGggcGCCGAcucGCg -3'
miRNA:   3'- -GUGGCG----GGGGCCGU-GCauuUGGCU---CG- -5'
1576 3' -58.5 NC_001347.2 + 38360 0.66 0.904855
Target:  5'- cCACgGCUCCCgcuaucgcgcacGGCGCGUccccGCCG-GCg -3'
miRNA:   3'- -GUGgCGGGGG------------CCGUGCAuu--UGGCuCG- -5'
1576 3' -58.5 NC_001347.2 + 38447 0.66 0.886167
Target:  5'- cCGCCGUCCCCGucGC-CGgccccGCCGcGCa -3'
miRNA:   3'- -GUGGCGGGGGC--CGuGCauu--UGGCuCG- -5'
1576 3' -58.5 NC_001347.2 + 38498 0.68 0.794519
Target:  5'- gCACCGCgCCCaGCGCcagccAGCCGcAGCa -3'
miRNA:   3'- -GUGGCGgGGGcCGUGcau--UUGGC-UCG- -5'
1576 3' -58.5 NC_001347.2 + 38681 0.68 0.824544
Target:  5'- uGCCgGCCCaccgCCGGCGCagcucccguCCGAGCg -3'
miRNA:   3'- gUGG-CGGG----GGCCGUGcauuu----GGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.