miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1576 3' -58.5 NC_001347.2 + 85337 0.68 0.835686
Target:  5'- gCGCCGCCgCCaGCGcCGUcgcccgcggcuAGGCCGAGa -3'
miRNA:   3'- -GUGGCGGgGGcCGU-GCA-----------UUUGGCUCg -5'
1576 3' -58.5 NC_001347.2 + 87828 0.74 0.502111
Target:  5'- aAUCGUCCUCuuugGGCACGUAGACC-AGCa -3'
miRNA:   3'- gUGGCGGGGG----CCGUGCAUUUGGcUCG- -5'
1576 3' -58.5 NC_001347.2 + 88136 0.71 0.655088
Target:  5'- aCACCGCCCacacgacgUCGGCACagcggGGugCGGGCc -3'
miRNA:   3'- -GUGGCGGG--------GGCCGUGca---UUugGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 88541 0.68 0.794519
Target:  5'- aCGCCGCCgCCGGCcuCGUcgGCCa--- -3'
miRNA:   3'- -GUGGCGGgGGCCGu-GCAuuUGGcucg -5'
1576 3' -58.5 NC_001347.2 + 90860 0.66 0.910664
Target:  5'- cCACCGCCgCCGccaucauguuGCGCGgaGACUcGGCc -3'
miRNA:   3'- -GUGGCGGgGGC----------CGUGCauUUGGcUCG- -5'
1576 3' -58.5 NC_001347.2 + 91190 0.71 0.635656
Target:  5'- aGCgCGCCUCCuaccagaagcuGGaCGCGUuGACCGAGCu -3'
miRNA:   3'- gUG-GCGGGGG-----------CC-GUGCAuUUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 94317 0.7 0.71275
Target:  5'- uCGCCGCCCacggcguccUCGGCGuCGUcggAGGCCGGuGCg -3'
miRNA:   3'- -GUGGCGGG---------GGCCGU-GCA---UUUGGCU-CG- -5'
1576 3' -58.5 NC_001347.2 + 102303 0.66 0.910664
Target:  5'- gCugUGCCaCCCGGUGCu---GCaCGAGCc -3'
miRNA:   3'- -GugGCGG-GGGCCGUGcauuUG-GCUCG- -5'
1576 3' -58.5 NC_001347.2 + 102362 0.65 0.914048
Target:  5'- gACCGCCCUCGGaacccgccaugcaACGacuGCuCGAGUg -3'
miRNA:   3'- gUGGCGGGGGCCg------------UGCauuUG-GCUCG- -5'
1576 3' -58.5 NC_001347.2 + 104339 0.72 0.616214
Target:  5'- gACCGCUggaUCCGGCACGc-GGCCG-GCg -3'
miRNA:   3'- gUGGCGG---GGGCCGUGCauUUGGCuCG- -5'
1576 3' -58.5 NC_001347.2 + 107417 0.7 0.731557
Target:  5'- gUACCGCCacgcuCCGGCGCGgcGGaCGAGg -3'
miRNA:   3'- -GUGGCGGg----GGCCGUGCauUUgGCUCg -5'
1576 3' -58.5 NC_001347.2 + 109826 0.68 0.803046
Target:  5'- uCGCCGCCaCCGGCaagACGccuugcCCGGGCc -3'
miRNA:   3'- -GUGGCGGgGGCCG---UGCauuu--GGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 111462 0.71 0.635656
Target:  5'- gACUGUCCCCGGCACugauccuGACCGGa- -3'
miRNA:   3'- gUGGCGGGGGCCGUGcau----UUGGCUcg -5'
1576 3' -58.5 NC_001347.2 + 112847 0.66 0.912929
Target:  5'- gGCCGCUa-CGGCGCcggGAuacaugacgggcacuGCCGAGCg -3'
miRNA:   3'- gUGGCGGggGCCGUGca-UU---------------UGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 113894 0.68 0.835686
Target:  5'- gGCUGUCCCUGGCccugcGCGUGcAACCaGuGCu -3'
miRNA:   3'- gUGGCGGGGGCCG-----UGCAU-UUGG-CuCG- -5'
1576 3' -58.5 NC_001347.2 + 116909 0.69 0.777076
Target:  5'- -cCCGCCgCCGGCuACGgcauccGAACCcAGCa -3'
miRNA:   3'- guGGCGGgGGCCG-UGCa-----UUUGGcUCG- -5'
1576 3' -58.5 NC_001347.2 + 117273 0.69 0.740848
Target:  5'- cCACCGCUUaggGGCauguaguaGCGUAGAUCGGGCg -3'
miRNA:   3'- -GUGGCGGGgg-CCG--------UGCAUUUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 124877 0.74 0.483908
Target:  5'- uCACCGCCUCCcgaGGCACGUcgGGGCUGuGUc -3'
miRNA:   3'- -GUGGCGGGGG---CCGUGCA--UUUGGCuCG- -5'
1576 3' -58.5 NC_001347.2 + 135213 0.78 0.302434
Target:  5'- gCGCCGaCCCCGGCugGgcGGCCGAu- -3'
miRNA:   3'- -GUGGCgGGGGCCGugCauUUGGCUcg -5'
1576 3' -58.5 NC_001347.2 + 135496 0.71 0.655088
Target:  5'- -cCCGCUCCCGGaGCuccuGACCGGGCc -3'
miRNA:   3'- guGGCGGGGGCCgUGcau-UUGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.