miRNA display CGI


Results 61 - 80 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1576 3' -58.5 NC_001347.2 + 135581 0.66 0.907204
Target:  5'- cCACCGuCCaCCCGGCccaccuaccgucguCGUcgGCCGAccGCc -3'
miRNA:   3'- -GUGGC-GG-GGGCCGu-------------GCAuuUGGCU--CG- -5'
1576 3' -58.5 NC_001347.2 + 135796 0.69 0.768175
Target:  5'- -cCCGUCCauuccgCGGCGgGUGGACCGGGa -3'
miRNA:   3'- guGGCGGGg-----GCCGUgCAUUUGGCUCg -5'
1576 3' -58.5 NC_001347.2 + 135934 0.7 0.684094
Target:  5'- aACCGggaCCCCGGUGCGggGgucccagcccgGCCGGGCc -3'
miRNA:   3'- gUGGCg--GGGGCCGUGCauU-----------UGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 136282 0.71 0.655088
Target:  5'- cCACCGCCgcggcccaugCCCGGCACG-GGGCuCGcGCu -3'
miRNA:   3'- -GUGGCGG----------GGGCCGUGCaUUUG-GCuCG- -5'
1576 3' -58.5 NC_001347.2 + 136847 0.66 0.898834
Target:  5'- -uCCGCCCCuaCGGgGCGUc-GCCuAGCa -3'
miRNA:   3'- guGGCGGGG--GCCgUGCAuuUGGcUCG- -5'
1576 3' -58.5 NC_001347.2 + 139919 0.68 0.835686
Target:  5'- uCACCGCgaucugaUCCGcGCGCu--GACCGAGCu -3'
miRNA:   3'- -GUGGCGg------GGGC-CGUGcauUUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 141831 0.71 0.645377
Target:  5'- gGCCGCCaCUgUGGCGCGUGAAUCGuuGGUa -3'
miRNA:   3'- gUGGCGG-GG-GCCGUGCAUUUGGC--UCG- -5'
1576 3' -58.5 NC_001347.2 + 151338 0.7 0.731557
Target:  5'- aCGCCGCaggCUCUgguGGCGCGUGGGCCcAGCc -3'
miRNA:   3'- -GUGGCG---GGGG---CCGUGCAUUUGGcUCG- -5'
1576 3' -58.5 NC_001347.2 + 153786 0.68 0.835686
Target:  5'- aCGCCGCUCa-GGC-CGUGGuaguCCGAGUc -3'
miRNA:   3'- -GUGGCGGGggCCGuGCAUUu---GGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 155563 0.69 0.78586
Target:  5'- aCGCggaGCCCgCGGCugGUA---CGAGCg -3'
miRNA:   3'- -GUGg--CGGGgGCCGugCAUuugGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 155760 0.66 0.886167
Target:  5'- aCGCCGCCUUccucaaguaCGuGCACGgcGACUGcGCg -3'
miRNA:   3'- -GUGGCGGGG---------GC-CGUGCauUUGGCuCG- -5'
1576 3' -58.5 NC_001347.2 + 156630 0.69 0.750053
Target:  5'- uCGCCGCUggCGGCGCcgcuGCCGGGCc -3'
miRNA:   3'- -GUGGCGGggGCCGUGcauuUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 172540 0.67 0.860623
Target:  5'- -cCCGCUggCUCGGCGCGgcuguauuauuagacGCCGGGCg -3'
miRNA:   3'- guGGCGG--GGGCCGUGCauu------------UGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 176194 0.68 0.82776
Target:  5'- gCACCGCCUCCGaacGCuCGUGAGCaacaGucGGCa -3'
miRNA:   3'- -GUGGCGGGGGC---CGuGCAUUUGg---C--UCG- -5'
1576 3' -58.5 NC_001347.2 + 177564 0.66 0.896986
Target:  5'- aCGCCGCCaacaUGGCguaauugACGgugagaacucggAGACCGAGCg -3'
miRNA:   3'- -GUGGCGGgg--GCCG-------UGCa-----------UUUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 178239 0.67 0.865659
Target:  5'- aCACUGCCCCCcGUugG---ACCagGAGCu -3'
miRNA:   3'- -GUGGCGGGGGcCGugCauuUGG--CUCG- -5'
1576 3' -58.5 NC_001347.2 + 181533 0.67 0.858437
Target:  5'- gACuCGCCCCUGGCcACGcaccuguGGCCgcagGAGCu -3'
miRNA:   3'- gUG-GCGGGGGCCG-UGCau-----UUGG----CUCG- -5'
1576 3' -58.5 NC_001347.2 + 182848 0.69 0.776191
Target:  5'- aGCuCGCCCUCGcGCGcCGUGggaucggcuucgaGAUCGAGCu -3'
miRNA:   3'- gUG-GCGGGGGC-CGU-GCAU-------------UUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 183298 0.71 0.664783
Target:  5'- aGCgCGUCCUCcagGGUGCGUGAGCCcGGGCg -3'
miRNA:   3'- gUG-GCGGGGG---CCGUGCAUUUGG-CUCG- -5'
1576 3' -58.5 NC_001347.2 + 183808 0.73 0.529955
Target:  5'- cCACCaggGCCUCCaGCGCGUAuacggGGCUGGGCa -3'
miRNA:   3'- -GUGG---CGGGGGcCGUGCAU-----UUGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.